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Protein Overview: MBD5_ARATH

General Information:
Name(s) found: MBD5_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 182 amino acids

    Gene Ontology:
    Cellular Component: perinucleolar chromocenter [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISS]
    methyl-CpG binding [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGTDQAQP PPENPATPVD SKSRKRATPG DDNWLPPDWR TEIRVRTSGT KAGTVDKFYY  60
   61 EPITGRKFRS KNEVLYYLEH GTPKKKSVKT AENGDSHSEH SEGRGSARRQ TKSNKKVTEP 120
  121 PPKPLNFDFL NVPEKVTWTG INGSEEAWLP FIGDYKIQES VSQDWDRVFT LVTSQNAGKT 180
  181 MF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 22.69897 Solution structure of the matrix attachment region-binding domain of chicken MeCP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle