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Protein Overview: RIBA3_ARATH

General Information:
Name(s) found: RIBA3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758840|dbj|BAB09512.1| GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|27363454|gb|AAO11646.1| At5g59750/mth12_150 [Arabidopsis thaliana] [NCBI NR]
  • gi|18424277|ref|NP_568913.1| riboflavin biosynthesis protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|15215752|gb|AAK91421.1| AT5g59750/mth12_150 [Arabidopsis thaliana] [NCBI NR]
  • gi|13605708|gb|AAK32847.1|AF361835_1 AT5g59750/mth12_150 [Arabidopsis thaliana] [NCBI NR]
  • Monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Arabidopsis thaliana GN=RIBA3 PE=1 SV=1 [Swiss-Prot]
  • (Q9FN89) GTP cyclohydrolase II, 3,4-dihydroxy-2-butanone-4-phoshate synthase (AT5g59750/mth12_150) [athaliana3702.FASTAC.txt]
  • GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana]gi|27363454|gb|AAO11646.1| At5g59750/mth12_150 [Arabidopsis thaliana]gi|13605708|gb|AAK32847.1| AT5g59750/mth12_150 [Arabidopsis thaliana]gi|15215752|gb|AAK91421. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Riboflavin biosynthesis protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | riboflavin biosynthesis protein, putative | chr5:24090623-24092637 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g59750/mth12_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g59750/mth12_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone-4-phoshate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=509 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g59750/mth12_150 OS=Arabidopsis thaliana GN=At5g59750 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 509 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: riboflavin biosynthetic process [IEA][ISS]
    Molecular Function: GTP cyclohydrolase II activity [IEA][ISS]
    3,4-dihydroxy-2-butanone-4-phosphate synthase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDSALYHPR IFFAHSFING LYSSPRFANT CWRLVSRSSW EIKASENSDR NVFDENPVRK  60
   61 TDGSLFDSAS FETVDAEITP ETDDFFVSDA EGDPDCPTQG YSSIELALQA LRKGKFVIVV 120
  121 DDETGDVEGN LIMAATLTSP KDIAFLIKNG SGIVSVGMKK ENLERLSLTL MSPEMEDEDS 180
  181 SAPTFTITVD AKSGTSTGVS ASDRAMTVLA LSSLDAKPDD FRRPGHVFPL KYRDGGVLRR 240
  241 AGHTEASVDL MILAGLRPLS VLSAILDQED GSMASLPYMK KLATEHDIPI VSLTDLIRYR 300
  301 RKRDKLVERI TVSRLPTKWG LFQAYCYRSK LDGTENIALV KGNVGNGEDI LVRVHSECLT 360
  361 GDIFGSARCD CGNQLDLAME LIEKEGRGVV VYLRGHEGRG IGLGHKLRAY NLQDEGHDTV 420
  421 QANVELGLSI DSREYGIGAQ MLRDIGVRTM RLMTNNPAKF TGLKGYGLAV VGRVPVVTPI 480
  481 TKENRRYMET KRKKMGHIYI SDNNDQPLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..304] PSI-BLAST 72.69897 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
    3 View Details [305..509] PSI-BLAST 72.69897 Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle