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Protein Overview: RDO2_ARATH

General Information:
Name(s) found: RDO2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3786016|gb|AAC67362.1| putative elongation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|26450199|dbj|BAC42218.1| putative elongation factor [Arabidopsis thaliana] [NCBI NR]
  • pir||E84806 probable elongation factor [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23297820|gb|AAN13033.1| putative elongation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15224901|ref|NP_181390.1| TFIIS (TRANSCRIPT ELONGATION FACTOR IIS); DNA binding / RNA polymerase II transcription elongation factor/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Transcription elongation factor TFIIS OS=Arabidopsis thaliana GN=TFIIS PE=1 SV=1 [Swiss-Prot]
  • (Q9ZVH8) Putative elongation factor [athaliana3702.FASTAC.txt]
  • putative elongation factor [Arabidopsis thaliana]gi|26450199|dbj|BAC42218.1| putative elongation factor [Arabidopsis thaliana]gi|3786016|gb|AAC67362.1| putative elongation factor [Arabidopsis thaliana]gi|25408599|pir||E84806 probable elongation factor [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor S-II (TFIIS) domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transcription factor S-II (TFIIS) domain-containing protein | chr2:16141880-16143397 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative elongation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative elongation factor OS=Arabidopsis thaliana GN=TFIIS PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    Biological Process: seed dormancy [IMP]
    RNA elongation [ISS]
    regulation of transcription, DNA-dependent [ISS]
    negative regulation of flower development [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    RNA polymerase II transcription elongation factor activity [IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDLIDLFE GAKKAADAAA LDGVTSSGPE VSQCIDALKQ LKKFPVTYDT LVATQVGKKL  60
   61 RSLAKHPVED IKSVATDLLE IWKKVVIEET AKAKKTEGTN GCKEAKVNKM DVEKPSNPAP 120
  121 VKVQKLQRGD SAKSIKVERK EPDNKVVTGV KIERKVPDIK VTNGTKIDYR GQAVKDEKVS 180
  181 KDNQSSMKAP AKAANAPPKL TAMLKCNDPV RDKIRELLVE ALCRVAGEAD DYERESVNAS 240
  241 DPLRVAVSVE SLMFEKLGRS TGAQKLKYRS IMFNLRDSNN PDLRRRVLTG EISPEKLITL 300
  301 SAEDMASDKR KQENNQIKEK ALFDCERGLA AKASTDQFKC GRCGQRKCTY YQMQTRSADE 360
  361 PMTTYVTCVN CDNHWKFC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 36.522879 RNA polymerase II-TFIIS complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle