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Protein Overview: RPB5A_ARATH

General Information:
Name(s) found: RPB5A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [NCBI NR]
  • pir||T51950 DNA-directed RNA polymerase (EC 2.7.7.6) 23K chain [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana] [NCBI NR]
  • gi|15228724|ref|NP_188871.1| NRPB5; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana GN=NRPB5A PE=1 SV=1 [Swiss-Prot]
  • (O81098) RNA polymerase I, II and III 24.3 kDa subunit (AT3G22320/MCB17_5) [athaliana3702.FASTAC.txt]
  • RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana]gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana]gi|15724322|gb|AAL06554.1| AT3g22320/MCB17_5 [Arabidopsis thaliana]gi|25083949|gb|AAN7214 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATRPABC24.3 | ATRPABC24.3 (ARABIDOPSIS THALIANA RNA POLYMERASE I, II AND III 24.3 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase | chr3:7891052-7892101 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g22320/MCB17_5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATRPABC24.3; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g22320/MCB17_5 OS=Arabidopsis thaliana GN=AtRPABC24.3 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 205 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase IV complex [IPI]
    DNA-directed RNA polymerase II, core complex [IPI]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR  60
   61 NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV VQQNLTPFAR TCISEISSKF 120
  121 HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL 180
  181 KRGQVVKIIR PSETAGRYVT YRYVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 78.0 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle