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Protein Overview: gi|18390626, gi|...

General Information:
Name(s) found: gi|8844126 [NCBI NR]
gi|25406904 [NCBI NR]
gi|23308355 [NCBI NR]
gi|18390626 [NCBI NR]
gi|15450711 [NCBI NR]
Description(s) found:
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  • gi|8844126|gb|AAF80218.1|AC025290_7 Contains similarity to an ADP-ribosylation factor binding protein GGA1 from Homo sapiens gb|AF190862 and contains a VHS PF|00790 domain. EST gb|BE037588 comes from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||G86197 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23308355|gb|AAN18147.1| At1g06210/F9P14_4 [Arabidopsis thaliana] [NCBI NR]
  • gi|18390626|ref|NP_563762.1| VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15450711|gb|AAK96627.1| At1g06210/F9P14_4 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LNC6) F9P14.7 protein (At1g06210/F9P14_4) [athaliana3702.FASTAC.txt]
  • At1g06210/F9P14_4 [Arabidopsis thaliana]gi|15450711|gb|AAK96627.1| At1g06210/F9P14_4 [Arabidopsis thaliana]gi|25406904|pir||G86197 hypothetical protein [imported] - Arabidopsis thalianagi|18390626|ref|NP_563762.1| VHS domain-containing protein / GAT do [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 VHS domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | VHS domain-containing protein / GAT domain-containing protein | chr1:1897566-1898985 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains similarity to an ADP-ribosylation factor binding protein GGA1 from Homo sapiens gb|AF190862 and contains a VHS PF|00790 domain. EST gb|BE037588 comes from this gene. [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g06210/F9P14_4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ENTH/VHS/GAT family protein | chr1:1897567-1898986 FORWARD LENGTH=383 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g06210/F9P14_4 OS=Arabidopsis thaliana GN=F9P14.7 PE=2 SV=1 [ARATH-contam.fasta]
  • At1g06210/F9P14_4 OS=Arabidopsis thaliana GN=F9P14.7 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 383 amino acids

    Gene Ontology:
    Cellular Component: Golgi stack [ISS]
    intracellular [IEA]
    Biological Process: intra-Golgi vesicle-mediated transport [ISS]
    intracellular protein transport [IEA][ISS]
    Molecular Function: protein transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLKIAEWG EKLKTGGAQM SRMVSEKVKD MLQAPTLESK MVDEATLETL EEPNWGMNMR  60
   61 ICAQINNDEF NGTEIVRAIK RKISGKSPVS QRLSLELLEA CAMNCEKVFS EVASEKVLDE 120
  121 MVWLIKNGEA DSENRKRAFQ LIRAWGQSQD LTYLPVFHQT YMSLEGENGL HARGEENSMP 180
  181 GQSSLESLMQ RPVPVPPPGS YPVPNQEQAL GDDDGLDYNF GNLSIKDKKE QIEITRNSLE 240
  241 LLSSMLNTEG KPNHTEDDLT VSLMEKCKQS QPLIQMIIES TTDDEGVLFE ALHLNDELQQ 300
  301 VLSSYKKPDE TEKKASIVEQ ESSGSKDTGP KPTEQEEQEP VKKTGADDDK KHSEASGSSN 360
  361 KTVKEEKQAV KIELGLSSDE DEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 47.69897 Tom1 protein
    2 View Details [181..383] PSI-BLAST 23.221849 ADP-ribosylation factor binding protein Gga1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.229007340928547 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.098272402754001 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle