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Protein Overview: ORP4C_ARATH

General Information:
Name(s) found: ORP4C_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8777357|dbj|BAA96947.1| oxysterol-binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|79331158|ref|NP_001032088.1| ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C); oxysterol binding [Arabidopsis thaliana] [NCBI NR]
  • gi|26449627|dbj|BAC41939.1| putative oxysterol-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242072|ref|NP_200534.1| ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C); oxysterol binding [Arabidopsis thaliana] [NCBI NR]
  • Oxysterol-binding protein-related protein 4C OS=Arabidopsis thaliana GN=ORP4C PE=2 SV=1 [Swiss-Prot]
  • (Q9LVD4) Oxysterol-binding protein-like [athaliana3702.FASTAC.txt]
  • putative oxysterol-binding protein [Arabidopsis thaliana]gi|8777357|dbj|BAA96947.1| oxysterol-binding protein-like [Arabidopsis thaliana]gi|15242072|ref|NP_200534.1| oxysterol-binding family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Oxysterol-binding family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | oxysterol-binding family protein | chr5:23210675-23212529 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • oxysterol-binding protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • oxysterol binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative oxysterol-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ORP4C | OSBP(oxysterol binding protein)-related protein 4C | chr5:23193449-23195303 FORWARD LENGTH=379 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: steroid metabolic process [IEA][ISS]
    Molecular Function: oxysterol binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKHVMLVKP FSLEDEKDSE NTPPNLIQRI LSLFKNVRPG SDLTNFQLPP QMNLARSQLQ  60
   61 CYGEIVYSFD GHDLLGECSR RDKPIERMKA MVTWYISTLR PLIFGLAPYN PVIGETHHVS 120
  121 NGHINVLAEQ ISHHPPVSAL HATHEKENVD VLLCQYFTPK FRGAYVDVEV KGKRVVKLLN 180
  181 HKETYEMNQP KLLMTFLPAM GAHWAGKIVI KCPETGLGAE LQLLSDSFLS RFTGNNKRAI 240
  241 KGKIFESSSR KQLYEISGHW DRTVTAKNTK TGQLEVIYKA SENIAKLKTP IVENLQEVSE 300
  301 SESAVVWGEV SEGIVTNNWE KAREAKRDVE EKQRESLRKR KASGQSWIPK HFSVARTGKD 360
  361 WDCVPLQPTV PRAPIVVPL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 68.221849 Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • sterol binding
    		•  3.12877992228795 bayes_pls_golite062009
  • oxysterol binding
    		•  2.56824234952236 bayes_pls_golite062009
  • steroid binding
    		•  2.54679035876403 bayes_pls_golite062009
  • lipid binding
    		•  1.46539100663772 bayes_pls_golite062009
  • binding
    		•  1.46098584475192 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0867097353003303 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle