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Protein Overview: MBD13_ARATH

General Information:
Name(s) found: MBD13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8885536|dbj|BAA97466.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15242941|ref|NP_200036.1| MBD13; methyl-CpG binding [Arabidopsis thaliana] [NCBI NR]
  • Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1 [Swiss-Prot]
  • (Q9LTJ8) Genomic DNA, chromosome 5, BAC clone:F17P19 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242941|ref|NP_200036.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MBD13 | MBD13 (methyl-CpG-binding domain 13) | chr5:21225323-21228860 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MBD13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MBD13; methyl-CpG binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: MBD13 | methyl-CPG-binding domain protein 13 | chr5:21208097-21211634 REVERSE LENGTH=746 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 746 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: methyl-CpG binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGEGISDGL SAERKVEIRV RKNGRKDKVI VEKSAAQGLP EGWIKKLEIT NRSGRKTRRD  60
   61 PFFIDPKSEY IFQSFKDASR YVETGNIGHY ARKLKESDIE DDDSGNGKTV LRLEYVDKRS 120
  121 ADDVLEKEKT IDDVRRSKRR NLSSSDEHSK NCKMTSDLSI VTSQVLEDLG KKEEVKDPIE 180
  181 KQLIAKRVTR SQTKASTTEE VVVDLKRNLS SSNAKSEKDS VNSSVRSQKP KKEAVMKEEE 240
  241 EQDSSEKRIT RSKVEEKKNE LSNSVARRTS KRLAGIELEP TPELKTRAKV QRIVPLDDEP 300
  301 TPELKTRTKV QRVVPPDDEP TPELKTRTKI QRIVPPDDEP TLELKTRTKV QRILPPDDEL 360
  361 TPELKSRTKV QRIVPPDDEL TPEFKTRTKV QQRIPPDDGR AGKCKQPVNH VTTSGSKKTE 420
  421 IPLNKEVAQS CNEQSSQKPH AAAATSNNRV SADSAVGIQN IGKAVGRKPS KDKKTLKSPL 480
  481 IVYELNPVFH LDGYKQKEEM SPVSPLSCQT SATKCEKTAA GKRVGRSSPK ANLTTSVKPT 540
  541 QISPLRSPNK GKQPHPSDSG SAIQRRNKLA NEYSNSSVVR GTCSEVMEKS TNSFSSAFDS 600
  601 TLADLCKDPC IAFAIKTLTG ESLCLLNTPA ISSNPINNHT KQKGVSFTPE TPGNVNTCSE 660
  661 KLVFPSPPPG ANIWQDPCID FAIKTLTGAI PIGLDEPDTK SKSQGMTSTT AATQEAKGRQ 720
  721 NNCDYMTNKT VGKPDDLRFT QSFSKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] MSA 2.164996 View MSA. No confident structure predictions are available.
    2 View Details [172..267] deduced N/A No confident structure predictions are available.
    3 View Details [268..422] MSA 2.185997 View MSA. No confident structure predictions are available.
    4 View Details [423..506] deduced N/A No confident structure predictions are available.
    5 View Details [507..746] MSA 1.178995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle