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Protein Overview: Y1301_ARATH

General Information:
Name(s) found: Y1301_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4587577|gb|AAD25808.1|AC006550_16 F10O3.17 [Arabidopsis thaliana] [NCBI NR]
  • pir||G86160 protein F10O3.17 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15218674|ref|NP_171800.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [NCBI NR]
  • BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 [Swiss-Prot]
  • (Q9SA69) F10O3.17 [athaliana3702.FASTAC.txt]
  • F10O3.17 [Arabidopsis thaliana]gi|25336219|pir||G86160 protein F10O3.17 [imported] - Arabidopsis thalianagi|15218674|ref|NP_171800.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Phototropic-responsive NPH3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F10O3.17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 634 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pollen tube growth [IEP]
    response to light stimulus [ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLVTVGELK PAFTGKRGFR LNSTIRHASE WPISDVSSDL TVQVGSSSFC LHKFPLVSRS  60
   61 GKIRKLLADP KISNVCLSNA PGGSEAFELA AKFCYGINIE INLLNIAKLR CASHYLEMTE 120
  121 DFSEENLASK TEHFLKETIF PSILNSIIVL HHCETLIPVS EDLNLVNRLI IAVANNACKE 180
  181 QLTSGLLKLD YSFSGTNIEP QTPLDWWGKS LAVLNLDFFQ RVISAVKSKG LIQDVISKIL 240
  241 ISYTNKSLQG LIVRDPKLEK ERVLDSEGKK KQRLIVETIV RLLPTQGRRS SVPMAFLSSL 300
  301 LKMVIATSSS ASTGSCRSDL ERRIGLQLDQ AILEDVLIPI NLNGTNNTMY DIDSILRIFS 360
  361 IFLNLDEDDE EEEHHHLQFR DETEMIYDFD SPGSPKQSSI LKVSKLMDNY LAEIAMDPNL 420
  421 TTSKFIALAE LLPDHARIIS DGLYRAVDIY LKVHPNIKDS ERYRLCKTID SQKLSQEACS 480
  481 HAAQNERLPV QMAVQVLYFE QIRLRNAMSS SIGPTQFLFN SNCHQFPQRS GSGAGSGAIS 540
  541 PRDNYASVRR ENRELKLEVA RMRMRLTDLE KDHISIKQEL VKSNPGTKLF KSFAKKISKL 600
  601 NSLFSFSSLK PSLSGKASSE SRFLFQRKRR HSVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] PSI-BLAST 20.522879 Crystal Structure of the B-Cell Lymphoma 6 (BCL6) BTB domain to 2.2 Angstrom
    2 View Details [125..229] deduced N/A No confident structure predictions are available.
    3 View Details [230..354] MSA 2.392985 View MSA. No confident structure predictions are available.
    4 View Details [355..454] deduced N/A Confident ab initio structure predictions are available.
    5 View Details [455..541] MSA 3.073984 View MSA. No confident structure predictions are available.
    6 View Details [542..634] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle