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Protein Overview: gi|15227497, gi|...

General Information:
Name(s) found: gi|46931262 [NCBI NR]
gi|38566670 [NCBI NR]
gi|25408779 [NCBI NR]
gi|1871178 [NCBI NR]
gi|15227497 [NCBI NR]
Description(s) found:
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  • gi|46931262|gb|AAT06435.1| At2g42060 [Arabidopsis thaliana] [NCBI NR]
  • gi|38566670|gb|AAR24225.1| At2g42060 [Arabidopsis thaliana] [NCBI NR]
  • pir||D84849 hypothetical protein At2g42060 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|1871178|gb|AAB63538.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15227497|ref|NP_181736.1| CHP-rich zinc finger protein, putative [Arabidopsis thaliana] [NCBI NR]
  • (P93741) At2g42060 protein [athaliana3702.FASTAC.txt]
  • At2g42060 [Arabidopsis thaliana]gi|1871178|gb|AAB63538.1| unknown protein [Arabidopsis thaliana]gi|46931262|gb|AAT06435.1| At2g42060 [Arabidopsis thaliana]gi|25408779|pir||D84849 hypothetical protein At2g42060 [imported] - Arabidopsis thalianagi|15227 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 CHP-rich zinc finger protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | CHP-rich zinc finger protein, putative | chr2:17555272-17556078 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g42060 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:17548194-17549000 FORWARD LENGTH=268 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g42060 OS=Arabidopsis thaliana GN=At2g42060 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 268 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV  60
   61 RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF SYCCPLCDFD LHVQCAHLPQ 120
  121 VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA 180
  181 SCAVNKPNPV AASAENCGAS DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL 240
  241 ELQKLQLELD MSSALANMIG SFNLSSFV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] FFAS03 2.3 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    2 View Details [142..268] PSI-BLAST 17.0 Crystal Structure of the Human Beta2-Chimaerin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle