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Protein Overview: gi|6630461, gi|1...

General Information:
Name(s) found: gi|6630461 [NCBI NR]
gi|25374749 [NCBI NR]
gi|21553608 [NCBI NR]
gi|18407646 [NCBI NR]
gi|109946495 [NCBI NR]
Description(s) found:
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  • gi|6630461|gb|AAF19549.1|AC007190_17 F23N19.9 [Arabidopsis thaliana] [NCBI NR]
  • pir||D96652 protein F23N19.9 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21553608|gb|AAM62701.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18407646|ref|NP_564800.1| transferase [Arabidopsis thaliana] [NCBI NR]
  • gi|109946495|gb|ABG48426.1| At1g62730 [Arabidopsis thaliana] [NCBI NR]
  • (Q9SI77) F23N19.9 (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown [Arabidopsis thaliana]gi|25374749|pir||D96652 protein F23N19.9 [imported] - Arabidopsis thalianagi|6630461|gb|AAF19549.1| F23N19.9 [Arabidopsis thaliana]gi|18407646|ref|NP_564800.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to hypothetical protein [Vitis vinifera] (GB:CAN63693.1); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) | chr1:23232869-23233783 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F23N19.9 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g62730 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g62730 OS=Arabidopsis thaliana GN=At1g62730 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biosynthetic process [IEA]
    Molecular Function: transferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGGSSSLR SALSYCVQQV RNYDYHHYLC LLELPTEMRK AAFALRAFNV ETARAMDVAS  60
   61 DPKIGLMRLL WWQEAIDKLY TKKPINHPAA QALSWAISEH NISKPWLKRS VDARIRDAQR 120
  121 EVDDIPESIA ELEKYAEDTV STLLYNTLQA GGISSTTADH AASHIGKASG LVLLLKSLPY 180
  181 HCTRNRHQSY IPADLAEKHG LLVKQGGRLE ILLDNDSREG LSNVVFEIAS VANAHLLKAR 240
  241 ELAGKVPAEA KPVLLHSVPV QVLLDSLNKV QFDVFDPRIQ RGVLGVPPLL FQFKLKWYSW 300
  301 RAMF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 53.69897 Squalene synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.87397377711135 bayes_pls_golite062009
  • transferase activity
    		•  1.34929557841705 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.22586398285056 bayes_pls_golite062009
  • prenyltransferase activity
    		•  0.302854173865421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle