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Protein Overview: gi|15229259, gi|...

General Information:
Name(s) found: gi|6721160 [NCBI NR]
gi|15229259 [NCBI NR]
Description(s) found:
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  • gi|6721160|gb|AAF26788.1|AC016829_12 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229259|ref|NP_187076.1| PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • (Q9M8Y2) T6K12.12 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|15229259|ref|NP_187076.1| SAP domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SAP domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PTAC3 | PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding | chr3:1123238-1127522 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 913 amino acids

    Gene Ontology:
    Cellular Component: nucleoid [IDA]
    nucleus [ISS]
    plastid chromosome [IDA]
    chloroplast [IDA]
    membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG  60
   61 SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI AAGLSPGPRS FHGLVVAHAL 120
  121 NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW 180
  181 LILVEELMRI NHLEDANKVF LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA 240
  241 AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEGLF MKPDTETYNW VIQAYTRAES 300
  301 YDRVQDVAEL LGMMVEDHKR VQPNVKTYAL LVECFTKYCV VKEAIRHFRA LKNFEGGTVI 360
  361 LHNAGNFEDP LSLYLRALCR EGRIVELIDA LDAMRKDNQP IPPRAMIMSR KYRTLVSSWI 420
  421 EPLQEEAELG YEIDYLARYI EEGGLTGERK RWVPRRGKTP LDPDASGFIY SNPIETSFKQ 480
  481 RCLEDWKVHH RKLLRTLQSE GLPVLGDASE SDYMRVVERL RNIIKGPALN LLKPKAASKM 540
  541 VVSELKEELE AQGLPIDGTR NVLYQRVQKA RRINKSRGRP LWVPPIEEEE EEVDEEVDDL 600
  601 ICRIKLHEGD TEFWKRRFLG EGLIETSVES KETTESVVTG ESEKAIEDIS KEADNEEDDD 660
  661 EEEQEGDEDD DENEEEEVVV PETENRAEGE DLVKNKAADA KKHLQMIGVQ LLKESDEANR 720
  721 TKKRGKRASR MTLEDDADED WFPEEPFEAF KEMRERKVFD VADMYTIADV WGWTWEKDFK 780
  781 NKTPRKWSQE WEVELAIVLM TKAGVIELGG IPTIGDCAVI LRAALRAPMP SAFLKILQTT 840
  841 HSLGYSFGSP LYDEIITLCL DLGELDAAIA IVADMETTGI TVPDQTLDKV ISARQSNESP 900
  901 RSEPEEPAST VSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 38.221849 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [142..657] PSI-BLAST 8.0 No description for 2gw1A was found.
    3 View Details [658..783] deduced N/A No confident structure predictions are available.
    4 View Details [784..913] MSA 1.048989 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle