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Protein Overview: PTR4_ARATH

General Information:
Name(s) found: PTR4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9757724|dbj|BAB08249.1| peptide transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|75171885|sp|Q9FNL8.1|PTR3B_ARATH RecName: Full=Putative peptide transporter PTR3-B [NCBI NR]
  • gi|15237369|ref|NP_199416.1| proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] [NCBI NR]
  • Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana GN=NPF5.3 PE=2 SV=1 [Swiss-Prot]
  • Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 [Swiss-Prot]
  • (Q9FNL8) Peptide transporter [athaliana3702.FASTAC.txt]
  • peptide transporter [Arabidopsis thaliana]gi|15237369|ref|NP_199416.1| proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Proton-dependent oligopeptide transport (POT) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr5:18688624-18690778 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • peptide transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Major facilitator superfamily protein | chr5:18671397-18673551 REVERSE LENGTH=586 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 586 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: oligopeptide transport [ISS]
    response to nematode [IEP]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVEEVGDDY TKDGTVDLRG NRVRRSQTGR WKACSFVVVY EVFERMAYYG ISSNLVIYMT  60
   61 TKLHQGTVKS SNNVTNWVGT SWLTPILGAY VADAHFGRYI TFVISSAIYL LGMALLTLSV 120
  121 SLPGLKPPKC STANVENCEK ASVIQLAVFF GALYTLAIGT GGTKPNISTI GADQFDEFDP 180
  181 KDKIHKHSFF NWWMFSIFFG TFFATTVLVY VQDNVGWAIG YGLSTLGLAF SIFIFLLGTR 240
  241 LYRHKLPMGS PFTKMARVIV ASLRKAREPM SSDSTRFYEL PPMEYASKRA FPIHSTSSLR 300
  301 FLNRASLKTG STHKWRLCTI TEVEETKQML KMLPVLFVTF VPSMMLAQIM TLFIKQGTTL 360
  361 DRRLTNNFSI PPASLLGFTT FSMLVSIVIY DRVFVKFMRK LTGNPRGITL LQRMGIGMIL 420
  421 HILIMIIASI TERYRLKVAA EHGLTHQTAV PIPLSIFTLL PQYVLMGLAD AFIEIAKLEF 480
  481 FYDQAPESMK SLGTSYTSTS MAVGYFMSSI LLSSVSQITK KQGRGWIQNN LNESRLDNYY 540
  541 MFFAVLNLLN FILFLVVIRF YEYRADVTQS ANVEQKEPNM VDNYNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..450] PSI-BLAST 5.30103 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [451..586] FFAS03 1.56 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.3426261924492 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.29689809004391 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  1.94035843948137 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.5181741634556 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • binding
    		•  1.04171109022636 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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