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Protein Overview: gi|18410226, gi|...

General Information:
Name(s) found: gi|7019655 [NCBI NR]
gi|7019653 [NCBI NR]
gi|18410226 [NCBI NR]
gi|18410222 [NCBI NR]
gi|11358854 [NCBI NR]
Description(s) found:
Found 16 descriptions.
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  • gi|7019655|emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|7019653|emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18410226|ref|NP_567016.1| splicing factor, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|18410222|ref|NP_567015.1| splicing factor, putative [Arabidopsis thaliana] [NCBI NR]
  • pir||T47659 spliceosomal-like protein - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1214 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    chloroplast [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA  60
   61 IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK VHQETFGKSG CRRIVPGQYV 120
  121 AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI 180
  181 FAAIELDYSE ADQDPTGQAA SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG 240
  241 ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ 300
  301 TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI 360
  361 GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE SLMPLMDMKV LNIFEEETPQ 420
  421 IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT 480
  481 LVLSIGEQVE EVNDSGFLDT TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR 540
  541 SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR 600
  601 FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL 660
  661 NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS VRGRSAMLCL SSRPWLGYIH 720
  721 RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP 780
  781 RKFVLHPKRK LLVIIESDQG AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK 840
  841 EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT 900
  901 LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG 960
  961 IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV GDIQESFHYC KYRRDENQLY1020
 1021 IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL1080
 1081 NGAPNKVDEI VQFHVGDVVT CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS1140
 1141 HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA1200
 1201 EILKKLEDAR NKII

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1214] PSI-BLAST 1000.0 No description for 3e0cA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle