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Protein Overview: gi|20908082, gi|...

General Information:
Name(s) found: gi|20908082 [NCBI NR]
gi|15240243 [NCBI NR]
gi|15146316 [NCBI NR]
gi|10177609 [NCBI NR]
Description(s) found:
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  • gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] [NCBI NR]
  • gi|15240243|ref|NP_201523.1| nitrogen regulation family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] [NCBI NR]
  • gi|10177609|dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FH91) Gb|AAF51525.1 (AT5g67220/K21H1_18) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]gi|15240243|ref|NP_201523.1| nitrogen regulation family protein [Arabi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nitrogen regulation family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nitrogen regulation family protein | chr5:26837502-26839152 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g67220/K21H1_18 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • FAD binding / oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g67220/K21H1_18 OS=Arabidopsis thaliana GN=At5g67220 PE=2 SV=1 [ARATH-contam.fasta]
  • AT5g67220/K21H1_18 OS=Arabidopsis thaliana GN=At5g67220 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 423 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    Biological Process: tRNA processing [IEA]
    metabolic process [IEA]
    oxidation reduction [IEA]
    regulation of nitrogen utilization [ISS]
    Molecular Function: tRNA dihydrouridine synthase activity [IEA]
    FAD binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNLSNLRF LRTRKSLISQ TRAMTQNPDP KPDPSQVLDD ILCSEQRDGQ IEETVDTAPA  60
   61 SLGSPSRVLS IDTRVERAWA HWKKLGRPKY IVAPMVDNSE LPFRLLCQKY GAQAAYTPML 120
  121 HSRIFTETEK YRNQEFTTCK EDRPLFVQFC ANDPDTLLEA AKRVEPYCDY VDINLGCPQR 180
  181 IARRGNYGAF LMDNLPLVKS LVEKLAQNLN VPVSCKIRIF PNLEDTLKYA KMLEDAGCSL 240
  241 LAVHGRTRDE KDGKKFRADW SAIKEVKNAM RIPVLANGNV RCIEDVDNCI KETGVEGVLS 300
  301 AETLLENPAA FAGFRTAEWA KDNEEEGFVD GGLDQGDLVV EYLKLCEKHP VPWRMIRSHV 360
  361 HKMLGEWFRI HPQVREQLNA QNILTFEFLY GLVDQLRELG GRVPLYKKKK IDTLTPQDSP 420
  421 QRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] deduced N/A No confident structure predictions are available.
    2 View Details [70..423] PSI-BLAST 53.69897 Crystal structure of a putative flavin oxidoreductase with flavin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle