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Protein Overview: ALFL3_ARATH

General Information:
Name(s) found: ALFL3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7543887|emb|CAB87196.1| nucleic acid binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|21386979|gb|AAM47893.1| nucleic acid binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|17065550|gb|AAL32929.1| nucleic acid binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15229157|ref|NP_189865.1| AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T47337 nucleic acid binding protein-like - Arabidopsis thaliana [NCBI NR]
  • PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1 [Swiss-Prot]
  • (Q9M2B4) Nucleic acid binding protein-like [athaliana3702.FASTAC.txt]
  • nucleic acid binding protein-like [Arabidopsis thaliana]gi|7543887|emb|CAB87196.1| nucleic acid binding protein-like [Arabidopsis thaliana]gi|17065550|gb|AAL32929.1| nucleic acid binding protein-like [Arabidopsis thaliana]gi|11281497|pir||T47337 nuclei [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 PHD finger family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | PHD finger family protein | chr3:14889116-14890606 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleic acid binding protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AL3 | alfin-like 3 | chr3:14878128-14879618 REVERSE LENGTH=250 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    methylated histone residue binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE  60
   61 VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD AWLLSVSFYF GSRFSFHKEE 120
  121 RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE 180
  181 DEEIDEDDED DHGETLCGAC GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC 240
  241 PSCSNKRARA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] MSA 2.196958 View MSA. No confident structure predictions are available.
    2 View Details [116..190] deduced N/A No confident structure predictions are available.
    3 View Details [191..250] PSI-BLAST 12.09691 Solution structure of PHD domain in nucleic acid binding protein-like NP_197993


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle