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Protein Overview: LRP1_ARATH

General Information:
Name(s) found: LRP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|58743288|gb|AAW81722.1| At5g12330 [Arabidopsis thaliana] [NCBI NR]
  • gi|42573349|ref|NP_974771.1| LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization [Arabidopsis thaliana] [NCBI NR]
  • gi|18416839|ref|NP_568266.1| LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization [Arabidopsis thaliana] [NCBI NR]
  • gi|14586363|emb|CAC42894.1| lateral root primordia (LRP1) [Arabidopsis thaliana] [NCBI NR]
  • Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1 [Swiss-Prot]
  • (Q94CK9) Lateral root primordia (LRP1) [athaliana3702.FASTAC.txt]
  • lateral root primordia (LRP1) [Arabidopsis thaliana]gi|18416839|ref|NP_568266.1| lateral root primordium 1 (LRP1) [Arabidopsis thaliana]gi|42573349|ref|NP_974771.1| lateral root primordium 1 (LRP1) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Lateral root primordium 1 (LRP1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LRP1 | LRP1 (LATERAL ROOT PRIMORDIUM 1) | chr5:3987678-3989075 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • lateral root primordia (LRP1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LRP1 (LATERAL ROOT PRIMORDIUM 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g12330 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LRP1 | Lateral root primordium (LRP) protein-related | chr5:3987677-3989074 REVERSE LENGTH=320 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g12330 OS=Arabidopsis thaliana GN=LRP1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: root development [IMP]
    response to auxin stimulus [IEP]
    Molecular Function: protein homodimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMVGLRDVF LVAPAYHHQN AGVISGSDHM NSNAAAAAAL GVGVIPLLTA GTPQQNVEDS  60
   61 DINFLGNNRR WQNNNNNHET QYLHFKSTNQ TTVGTSSNNS GSGSGASGTA TCQDCGNQAK 120
  121 KECKQRRCRT CCKSRGFDCS THVKSTWVSA ARRRERQVMP TGANPTAGSS LSTSSGTKKP 180
  181 RIVGSQQQQQ QQATSHTSTS NTPPQSFETS SSRQDGGGSR EAWPGQVRAA AVFKCVRVTA 240
  241 VEDGDDEYAY QAVVKIGGHV FKGFLYDQGL EPKEGFPSMS DLHLGGSANN HNGVSASAPI 300
  301 LDPPNVVYGG GGGSGGGFYS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..320] Pfam 117.886057 No description for PF05142.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle