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Protein Overview: gi|15232712, gi|...

General Information:
Name(s) found: gi|6682233 [NCBI NR]
gi|15232712 [NCBI NR]
gi|119360159 [NCBI NR]
gi|110741417 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|6682233|gb|AAF23285.1|AC016661_10 putative pectate lyase [Arabidopsis thaliana] [NCBI NR]
  • gi|15232712|ref|NP_187565.1| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|119360159|gb|ABL66808.1| At3g09540 [Arabidopsis thaliana] [NCBI NR]
  • gi|110741417|dbj|BAF02257.1| putative pectate lyase [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLHGIHRS HHGGSNFPGE APNSPFPPPY TAAPAPAPAP SSPSDHHMTV GPYCHVDSSL  60
   61 RSLAGKAEGF GRAAVGGLNG PICHVTSLAD EGPGSLREAC KRPEPLWIVF DVSGTINLSS 120
  121 FVNVSSHTTV DGRGQKVKIT GKGLRLKECE NVIICNLEFE GGVGPDADAI QIKPKSHNIW 180
  181 IDRCSLKNYY DGLIDITRES TDITVSRCHF MNHNKTMLIG ADTSHVTDRC IRVTIHHCFF 240
  241 DGTRQRHPRV RFAKVHLFNN YTRHWAIYAV GAGVESQIHS QCNIYEAGEK KTVFKYITEK 300
  301 AADKEKPGAG FVRSEGDLLL NGAKSCLSQG GERYVFSPIQ HYSEWTVESP TDILKNYLKH 360
  361 STGWQNLPLP LDRPPTTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 59.69897 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle