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Protein Overview: gi|10177105, gi|...

General Information:
Name(s) found: gi|15237300 [NCBI NR]
gi|10177105 [NCBI NR]
Description(s) found:
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  • gi|15237300|ref|NP_200103.1| ATIM (TIMELESS) [Arabidopsis thaliana] [NCBI NR]
  • gi|10177105|dbj|BAB10439.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FLX0) Genomic DNA, chromosome 5, P1 clone:MXC20 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237300|ref|NP_200103.1| timeless family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Timeless family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATIM | ATIM (TIMELESS) | chr5:21475000-21480385 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATIM (TIMELESS) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATIM | timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Timeless family protein OS=Arabidopsis thaliana GN=ATIM PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1141 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    Biological Process: regulation of circadian rhythm [NAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEERISTK KKIDLEGLSV ICSDLGLPEE DEDRRRIGYS KSEYCLDNLK DLLRFLRRDD  60
   61 PESREVFKQV CAWNIVSKDL IPIIEHYQDE HNLVLNAVKV LVFLTMPIEP SSDDIPQQLE 120
  121 YLWGLKSAIT FSNIVAVIVS LLEAPLENLE LDVFNEEDWK LVQLVLTLFR NLLAIHDVSP 180
  181 IQKAGESTCY FLSLRDQFLE VLSRENVMDI VLVITQTIEG FNSLLRHDNL LLLEIYHYIL 240
  241 LGQDMELVAK APEKLDQGKQ ASVDSLKTLM KEEEVKRKLA RLNNMNQRHS QFGGTFTRVT 300
  301 MDGTKAVLKG IPSTTESTML KPQQGRGATE KIVWEHGPMS VTNDKSLCED IEKEHPSIQN 360
  361 SDIVTFFQVA QSITSFQFHK SSASSPAIET EETSELTTNQ KAGVNFSKSD ICAPIAATIN 420
  421 DRMFLLVISK WRCAFDGLKE TKDFKFLSAA SSLVKTMLCL LDLVIKLLPE DSKEAFTVRI 480
  481 LLYKLFYDQT DQGMCQFILN LVRSFDTHKQ PKSELGDLVE SIHIIVGLME NLQGRGTLRV 540
  541 SKKSRKARKK KPKGNKEATV HKLSENHPST SNEASTAKSI PMVDSTVSTE DGPMDVPPNK 600
  601 PEASNLETET DETQQMHSPK SNNVVDDLSS GSDDSSDGEE QTATDEVDFK VSTFISAFAS 660
  661 NSIIQNLCWL LKFYKSNPKQ TNHHVISILR RITEDLELAP MLYQLSLLIT FHKILDEQKV 720
  721 CPCKDYENIV TFLTDLVRNM LKKMKSQPLL FVEILFSKTR KECHYINAEY MLHELGHLRK 780
  781 QMGNQEKFSG TEEFGTSSDK GWAHRSLADA LGDDEADVVI SYDQGFQNED DDMVEDKSAG 840
  841 PSKRKRRLVL DGDMDIKIKD LYDRYKDDKN CSRLIAENLV PDGGISAAQV TNKLKQLGLE 900
  901 TRKRLRRGGT DHLDATSLAQ PSNTRKRVSS FSKEQETLIK ELYKKFKDEK RCCYLIASEL 960
  961 GSENTYTTAQ VSRKLKQLGL RLPRGKKSEA GMMLKDDHDD SSADESEDET LLAFKNRKSR1020
 1021 KNQKNKQQTG SINEITPGGS EDNTERNETS LHEPTAGEEE DNDQSYITRE SRQSETDVHI1080
 1081 SDNGPSTSLP EDPNLSSDNE LEDDELADWG DDSAAGGASL TQSPLSRRKL KMVLDKDDED1140
 1141 D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] deduced N/A No confident structure predictions are available.
    2 View Details [224..365] MSA 1.072992 View MSA. No confident structure predictions are available.
    3 View Details [366..621] deduced N/A No confident structure predictions are available.
    4 View Details [622..746] deduced N/A No confident structure predictions are available.
    5 View Details [747..914] deduced N/A No confident structure predictions are available.
    6 View Details [915..1141] MSA 1.135991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle