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Protein Overview: gi|9758540, gi|1...

General Information:
Name(s) found: gi|9758540 [NCBI NR]
gi|15240136 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|9758540|dbj|BAB08934.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15240136|ref|NP_201496.1| catalytic/ pyridoxal phosphate binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 870 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: pyridoxal phosphate binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHISLWKPIY HCAAALVLDK KSSGSSSSSS RNRDVTQRKL HESKLREALE QASEDGLLVK  60
   61 SQDMEEEDES QDQILGRSRS LARLNAQREF LRATSLAAQR AFESEETLPE LEEALTIFLT 120
  121 MYPKYQSSEK VDELRNDEYF HLSLPKVCLD YCGFGLFSYL QTVHYWDTCT FSLSEISANL 180
  181 SNHAIYGGAE KGSIEHDIKI RIMDYLNIPE NEYGLVFTVS RGSAFKLLAE SYPFHTNKKL 240
  241 LTMFDHESQS VSWMGQCAKE KGAKVGSAWF KWPTLRLCSM DLKKEILSKK KRKKDSATGL 300
  301 FVFPVQSRVT GSKYSYQWMA LAQQNNWHVL LDAGALGPKD MDSLGLSLFR PDFIITSFYR 360
  361 VFGYDPTGFG CLLIKKSVIS CLQSQSGKTS SGIVKITPEY PLYLSDSMDG LEGLTGIQDN 420
  421 GIAINGDNKA LGTQLPAFSG AYTSAQVQDV FETDMDHEIG SDRDNTSAVF EEAESISVGE 480
  481 LIKSPVFSED ESSDSSLWID LGQSPADSDN AGHLNKQKSP LLVRKNHKRR SSPKPASKAN 540
  541 NGSNGGRHVL SFDAAVLSVS HEVGEEVIEE ENSEMNQIDT SRRLRVTEIE EEEEEGGSSK 600
  601 LTAHANGSSS GIKDSAIRRE TEGEFRLLGR REKSQYNGGR LLVNEDEHPS KRRVSFRSVD 660
  661 HGEASVISLG DEDEEEDGSN GVEWDDDQRE PEIVCRHIDH VNMLGLNKTT SRLRYLINWL 720
  721 VTSLLQLRLP RSDSDGEHKN LVQIYGPKIK YERGSSVAFN IRDLKSGMVH PEIVQKLAER 780
  781 EGISLGIGYL SHIKIIDNRS EDSSSWKPVD REGRNNGFIR VEVVTASLGF LTNFEDVYRL 840
  841 WNFVAKFLSP GFAKQGTLPT VIEEDDSSET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..150] deduced N/A No confident structure predictions are available.
    2 View Details [151..484] PSI-BLAST 71.39794 Cysteine desulfurase IscS
    3 View Details [485..870] PSI-BLAST 66.69897 NifS-like protein/selenocysteine lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.76873005093488 bayes_pls_golite062009
  • transferase activity
    		•  0.3093369052482 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  1.76873005093488 bayes_pls_golite062009
  • transferase activity
    		•  0.3093369052482 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle