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Protein Overview: SMC21_ARATH

General Information:
Name(s) found: SMC21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15241831|ref|NP_201047.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|146325733|sp|Q9C5Y4.2|SMC21_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-1; Short=AtSMC2-1; AltName: Full=Chromosome-associated protein E-1; Short=AtCAP-E1; AltName: Full=Protein TITAN 3 [NCBI NR]
  • gi|10178072|dbj|BAB11491.1| chromosome assembly protein homolog [Arabidopsis thaliana] [NCBI NR]
  • Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2 [Swiss-Prot]
  • (Q9FJK1) Chromosome assembly protein homolog [athaliana3702.FASTAC.txt]
  • SMC2-like condensin, putative (SMC2) (TITAN3) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: TTN3, ATCAP-E1, ATSMC4, SMC2 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) | chr5:25073534-25079662 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • chromosome assembly protein homolog [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural maintenance of chromosomes 2 | chr5:25056308-25062436 FORWARD LENGTH=1175 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1175 amino acids

    Gene Ontology:
    Cellular Component: condensin complex [ISS]
    Biological Process: chromosome organization [IEA]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIKEICLEG FKSYATRTVV SGFDPHFNAI TGLNGSGKSN ILDSICFVLG ITNLQQVRAA  60
   61 NLQELVYKQG QAGITKATVS VTFDNSERHR SPLGYEEHPE ITVTRQIVVG GRNKYLINGK 120
  121 LAQPSQVQNL FHSVQLNVNN PHFLIMQGRI TKVLNMKPPE ILSMLEEAAG TRMYENKKEA 180
  181 ALKTLEKKQT KVDEINKLLD HEILPALEKL RKEKSQYMQW ANGNAELDRL RRFCIAFEYV 240
  241 QAEKIRDNAV LGVGEMKAKL GKIDAETEKT QEEIQEFEKQ IKALTQAKEA SMGGEVKTLS 300
  301 EKVDSLAQEM TRESSKLNNK EDTLLGEKEN VEKIVHSIED LKKSVKERAA AVKKSEEGAA 360
  361 DLKQRFQELS TTLEECEKEH QGVLAGKSSG DEEKCLEDQL RDAKIAVGTA GTELKQLKTK 420
  421 IEHCEKELKE RKSQLMSKLE EAIEVENELG ARKNDVEHVK KALESIPYNE GQMEALEKDR 480
  481 GAELEVVQRL EDKVRGLSAQ LANFQFTYSD PVRNFDRSKV KGVVAKLIKV KDRSSMTALE 540
  541 VTAGGKLYDV VVDSEDTGKQ LLQNGALRRR VTIIPLNKIQ SYVVQPRVQQ ATARLVGKDN 600
  601 AELALSLVGY SDELKNAMEY VFGSTFVCKT TDVAKEVAFN RDIRTPSVTL EGDIFQPSGL 660
  661 LTGGSRKGGG DRLRKLHDLA EAESELQGHQ KRLADVESQI KELQPLQMKF TDVYAQLELK 720
  721 TYDLSLFLKR AEQNEHHKLG EAVKKLEEEL EEAKSQIKEK ELAYKNCFDA VSKLENSIKD 780
  781 HDKNREGRLK DLEKNIKTIK AQMQAASKDL KSHENEKEKL VMEEEAMKQE QSSLESHLTS 840
  841 LETQISTLTS EVDEQRAKVD ALQKIHDESL AELKLIHAKM KECDTQISGF VTDQEKCLQK 900
  901 LSDMKLERKK LENEVVRMET DHKDCSVKVD KLVEKHTWIA SEKQLFGKGG TDYDFESCDP 960
  961 YVAREKLEKL QSDQSGLEKR VNKKVMAMFE KAEDEYNALI SKKNTIENDK SKITKVIEEL1020
 1021 DEKKKETLKV TWVKVNQDFG SIFSTLLPGT MAKLEPPEDG NFLDGLEVRV AFGKVWKQSL1080
 1081 SELSGGQRSL LALSLILALL LFKPAPLYIL DEVDAALDLS HTQNIGRMIR AHFPHSQFIV1140
 1141 VSLKEGMFNN ANVLFRTKFV DGVSTVQRTV TKQTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] PSI-BLAST 51.0 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.
    2 View Details [205..528] PSI-BLAST 17.69897 Heavy meromyosin subfragment
    3 View Details [529..699] PSI-BLAST 13.69897 Smc hinge domain
    4 View Details [700..1027] PSI-BLAST 7.0 No description for 2dfsA was found.
    5 View Details [1028..1175] PSI-BLAST 27.522879 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle