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Protein Overview: NFXL1_ARATH

General Information:
Name(s) found: NFXL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4914319|gb|AAD32867.1|AC005489_5 F14N23.5 [Arabidopsis thaliana] [NCBI NR]
  • pir||D86236 protein F14N23.5 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15218447|ref|NP_172488.1| ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1); protein binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1 [Swiss-Prot]
  • (Q9SY59) F14N23.5 [athaliana3702.FASTAC.txt]
  • F14N23.5 [Arabidopsis thaliana]gi|25402589|pir||D86236 protein F14N23.5 [imported] - Arabidopsis thalianagi|15218447|ref|NP_172488.1| NF-X1 type zinc finger family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 NF-X1 type zinc finger family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATNFXL1 | ATNFXL1; transcription factor | chr1:3333927-3337493 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F14N23.5 [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1); protein binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333925-3337491 REVERSE LENGTH=1188 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1188 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    Biological Process: response to salt stress [IMP]
    regulation of transcription, DNA-dependent [ISS]
    response to light intensity [IMP]
    salicylic acid biosynthetic process [IMP]
    response to microbial phytotoxin [IMP]
    defense response to bacterium [IMP]
    Molecular Function: transcription factor activity [IEA][ISS]
    zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET LDAGSASRPV  60
   61 YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ HQRSDNIGPP QPNQHRRYNA 120
  121 PDNQHQRSDN SGPPQPYRHR RNNAPENQHQ RSDNIGPPPP NRQRRNNASG TLPDNRQRVA 180
  181 SRTRPVNQGK RVAKEENVVL TDPNLPQLVQ ELQEKLVKSS IECMICYDKV GRSANIWSCS 240
  241 SCYSIFHINC IKRWARAPTS VDLLAEKNQG DNWRCPGCQS VQLTSSKEIS YRCFCGKRRD 300
  301 PPSDPYLTPH SCGEPCGKPL EKEFAPAETT EEDLCPHVCV LQCHPGPCPP CKAFAPPRSC 360
  361 PCGKKMVTTR CSERRSDLVC GQRCDKLLSC GRHQCERTCH VGPCDPCQVL VNATCFCKKK 420
  421 VETVICGDMN VKGELKAEDG VYSCSFNCGK PLGCGNHFCS EVCHPGPCGD CDLLPSRVKT 480
  481 CYCGNTRLEE QIRQSCLDPI PSCSNVCRKL LPCRLHTCNE MCHAGDCPPC LVQVNQKCRC 540
  541 GSTSRAVECY ITTSSEAEKF VCAKPCGRKK NCGRHRCSER CCPLLNGKKN DLSGDWDPHV 600
  601 CQIPCQKKLR CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GRTSIPPPLS CGTPVPSCQL 660
  661 PCPIPQPCGH SDTHGCHFGD CPPCSTPVEK KCVGGHVVLR NIPCGLKDIR CTKICGKTRR 720
  721 CGMHACARTC HPEPCDSFNE SEAGMRVTCR QKCGAPRTDC RHTCAALCHP SAPCPDLRCE 780
  781 FSVTITCSCG RITATVPCDA GGRSANGSNV YCAAYDEASV LQKLPAPLQP VESSGNRIPL 840
  841 GQRKLSCDDE CAKLERKRVL QDAFDITPPN LEALHFSENS AMTEIISDLY RRDPKWVLAV 900
  901 EERCKFLVLG KARGSTSALK VHIFCPMQKD KRDTVRLIAE RWKLGVSNAG WEPKRFTVVH 960
  961 VTAKSKPPTR IIGARGGAIS IGGPHPPFYD SLVDMDPGLV VSFLDLPREA NISALVLRFG1020
 1021 GECELVWLND KNALAVFHDH ARAATAMRRL EHGSVYHGAV VVQSGGQSPS LNNVWGKLPG1080
 1081 SSAWDVDKGN PWRRAVIQES DDSWGAEDSP IGGSSTDAQA SALRSAKSNS PIVTSVNRWS1140
 1141 VLEPKKASTS TLEPIAQIEE SSSSKTTGKQ PVEGSGEEVV DDWEKVCE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] deduced N/A No confident structure predictions are available.
    2 View Details [144..294] PSI-BLAST 4.69897 Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
    3 View Details [295..659] PSI-BLAST 15.39794 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor
    4 View Details [660..752] deduced N/A No confident structure predictions are available.
    5 View Details [753..1005] PSI-BLAST 4.0 No description for 2dtgE was found.
    6 View Details [1006..1188] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle