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Protein Overview: SHI_ARATH

General Information:
Name(s) found: SHI_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4929803|gb|AAD34162.1|AF152555_1 putative zinc finger protein SHI [Arabidopsis thaliana] [NCBI NR]
  • gi|225879168|dbj|BAH30654.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15239350|ref|NP_201436.1| SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|10177429|dbj|BAB10714.1| zinc finger protein SHI-like [Arabidopsis thaliana] [NCBI NR]
  • Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1 [Swiss-Prot]
  • (Q9XGX0) Putative zinc finger protein SHI (Zinc finger protein SHI-like) [athaliana3702.FASTAC.txt]
  • zinc finger protein SHI-like [Arabidopsis thaliana]gi|4929803|gb|AAD34162.1| putative zinc finger protein SHI [Arabidopsis thaliana]gi|15239350|ref|NP_201436.1| zinc finger protein, putative (SHI) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SHI | SHI (SHORT INTERNODES); transcription factor | chr5:26521940-26523369 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SHI (SHORT INTERNODES); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • zinc finger protein SHI-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative zinc finger protein SHI [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SHI | Lateral root primordium (LRP) protein-related | chr5:26504714-26506143 REVERSE LENGTH=331 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Lateral root primordium-related protein OS=Arabidopsis thaliana GN=SHI PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 331 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TAS]
    Biological Process: response to gibberellin stimulus [IMP]
    gibberellic acid mediated signaling pathway [TAS]
    Molecular Function: transcription factor activity [TAS]
    protein binding [ISS]
    protein heterodimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFFSLGHG GGGNTPDNHR TNTNNPSSSG TESWLWCRNP NSNADGGEAG PSYKGTLELW  60
   61 QHPNNQEIIF QQQQQQQQRL DLYTSAAGLG VGPSNRSLIE TSGGALMMMR SGSGSGGPSC 120
  121 QDCGNQSKKD CSHMRCRTCC KSRGLDCPTH VKSTWVPAAK RRERQQQLST GQQPQQLGGS 180
  181 VPKRQRERIP ARSTSMAYTR IPSNNTSGLE VGNFPPEVSS SAVFRCVRVS SVDDEEEEYA 240
  241 YKTAVSIGGH VFKGVLYDQG PAERSSSGGG SQPLNLITAG PSASSSSPNV SCNNGVVGST 300
  301 SDHYIDPASL NYPTPINTFM TGTHFFSNSR S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] deduced N/A No confident structure predictions are available.
    2 View Details [105..331] Pfam 111.468521 No description for PF05142.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle