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Protein Overview: gi|9758163, gi|1...

General Information:
Name(s) found: gi|9758163 [NCBI NR]
gi|15240493 [NCBI NR]
gi|110741973 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|9758163|dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] [NCBI NR]
  • gi|15240493|ref|NP_200342.1| TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I [Arabidopsis thaliana] [NCBI NR]
  • gi|110741973|dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 917 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: DNA topological change [IC]
    Molecular Function: DNA topoisomerase type I activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEAFVKPV VPNGHDGYED EDEDDIPLVF KRNSNTAATT NRPSPINNAM RNSAIGSTKS  60
   61 SPPMRSPLTS PNRSASSSTR SSMMKPALPS SSSVQRSTLK SPLRDDRSVV AKERNGFGKA 120
  121 PSVSKSDDED SEDDKPLSAR LKLDSKEVTK QPSSSGRGST QQAVQKSNMR PQGLSDYTKK 180
  181 KVLDERAPMS STVQTKTSVG TSSSKPVHIE QKRPLVNNID RNGLKPKTEG HSSQAPAKRP 240
  241 LEKGSSSNQS SVKRPKLSEP ARPVKVEQGS HISATQDAKG KNLDASKPLR ANQATVKEDN 300
  301 SDGDDHVPIA SRMKSDSSNN KSSSAKPSSS KMIASSSRTI AQKPNKWVKD SKYSKSSKSL 360
  361 PSGDGQKKWK TLQHNGVIFP PPYKRHGVKI LFQGKPVDLT PEQEEVATMF AVMRETEYYK 420
  421 KPKFRENFWN DWRKLLGKNH MIKSLDDCDF TPIYEWYMQE KETKKQMTAE EKRIVKEEKL 480
  481 KQEEKYMWAV LDGVRERIGN FRVEPPGLFR GRGEHPKMGK LKKRIRPCDI TINIGKEAPI 540
  541 PECPIPGERW KEVKHDNTVT WLAFWSDPIN PKEFKYVFLA ASSSLKGQSD KEKYEKARKL 600
  601 HNHIGSIRAA YTKDFNNKDV TKRQIAVATY LIDKLALRAG NEKDDDEADT VGCCTLKVGN 660
  661 VECIPPNKLK FDFLGKDSIQ YVNTVEVEPL VYKAIGQFQA GKSKTDDLFD ELDTSKLNTH 720
  721 LKELMAGLTA KVFRTYNASI TLDLMLSKET RDGDVPEKVV VYQQANKEVA IICNHQRTVS 780
  781 KSHGAQVEKL AVKIEELREQ IKELNIDLDR AKKGRTPLMG SDGKRKRNLT PEALEKKIMQ 840
  841 TQGKIEKMER DMQTKEDMKT VALGTSKINY MDPRITVAWC KRHDVPIEKI FNKSLLAKFA 900
  901 WAMDVDPEFR FCSSTDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] MSA 3.351992 View MSA. No confident structure predictions are available.
    2 View Details [166..354] deduced N/A No confident structure predictions are available.
    3 View Details [355..917] PSI-BLAST 1000.0 Eukaryotic DNA topoisomerase I, catalytic core; Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle