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Protein Overview: VCS_ARATH

General Information:
Name(s) found: VCS_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9294536|dbj|BAB02799.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|30682603|ref|NP_187938.2| VCS (VARICOSE); nucleotide binding / protein homodimerization [Arabidopsis thaliana] [NCBI NR]
  • Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS PE=1 SV=1 [Swiss-Prot]
  • (Q9LTT8) Gb|AAF53066.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|30682603|ref|NP_187938.2| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: VCS | VCS (VARICOSE); nucleotide binding | chr3:4304092-4309956 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • VCS (VARICOSE); nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1344 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1344 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasmic mRNA processing body [IDA]
    cytosol [IDA]
    Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA [IDA]
    mRNA catabolic process [IMP]
    leaf morphogenesis [IMP]
    Molecular Function: nucleotide binding [ISS]
    protein homodimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA  60
   61 QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR SNHNPGTHIL ALLNNTNNGA 120
  121 PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI 180
  181 QPQLEVTPIT KYGSDPQLVV GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV 240
  241 TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV 300
  301 CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT 360
  361 DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG HPVSSATFVT SPERPDHIIL 420
  421 ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA 480
  481 GLLLLANAKR NALYAVHLDY GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC 540
  541 VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV 600
  601 PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS 660
  661 PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ MDAVGERNLD VSSVEEISRS 720
  721 KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN 780
  781 NDPRDTEVEV KEISEARSTQ NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS 840
  841 TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL 900
  901 ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV 960
  961 ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV NATTNFMSKE LNAMFEKTIK1020
 1021 KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA1080
 1081 QFQTSGKQAL QEGLRSSVES SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH1140
 1141 SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL1200
 1201 LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS1260
 1261 QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI AVHARPIFEQ VYQILHHHRN1320
 1321 APGSDVSAIR LIMHVINSML MGCK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 6.0 TolB, C-terminal domain; TolB, N-terminal domain
    2 View Details [99..436] PSI-BLAST 75.221849 No description for 2ovpB was found.
    3 View Details [437..532] deduced N/A No confident structure predictions are available.
    4 View Details [533..1100] PSI-BLAST 3.30103 Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin
    5 View Details [1101..1244] PSI-BLAST 21.39794 Heavy meromyosin subfragment
    6 View Details [1245..1344] PSI-BLAST 9.09691 No description for 2i1jA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle