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Protein Overview: gi|42567684, gi|...

General Information:
Name(s) found: gi|9759314 [NCBI NR]
gi|42567684 [NCBI NR]
gi|21281056 [NCBI NR]
gi|14532640 [NCBI NR]
Description(s) found:
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  • gi|9759314|dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana] [NCBI NR]
  • gi|42567684|ref|NP_196234.3| ATO (ATROPOS); nucleic acid binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|21281056|gb|AAM44910.1| putative splicing factor 3a protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14532640|gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana] [NCBI NR]
  • (Q9FG01) Putative splicing factor 3a protein [athaliana3702.FASTAC.txt]
  • putative splicing factor 3a protein [Arabidopsis thaliana]gi|14532640|gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana]gi|9759314|dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana]gi|42567684|ref|NP_196234.3| splicing factor-rela [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splicing factor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | splicing factor-related | chr5:1862624-1866299 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative splicing factor 3a protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • splicing factor 3a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative splicing factor 3a [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATO | splicing factor-related | chr5:1862623-1866298 REVERSE LENGTH=504 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative splicing factor 3a OS=Arabidopsis thaliana GN=ATO PE=2 SV=1 [ARATH-contam.fasta]
  • Putative splicing factor 3a OS=Arabidopsis thaliana GN=ATO PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 504 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    Biological Process: regulation of embryo sac egg cell differentiation [IMP]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE  60
   61 TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY HKRHPSGRLV DANEDYEARL 120
  121 KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ 180
  181 YMKYMEALLE YLVYFFQRTE PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI 240
  241 DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP 300
  301 PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG 360
  361 EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY KLHGLGQEFK CEICGNYSYW 420
  421 GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE 480
  481 EYEDREGNIY NKKTYSDLQR QGLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 2.038958 View MSA. No confident structure predictions are available.
    2 View Details [186..307] MSA 9.048995 View MSA. No confident structure predictions are available.
    3 View Details [308..378] deduced N/A No confident structure predictions are available.
    4 View Details [379..504] FFAS03 1.06 Solution Structure of a Human C2H2-type Zinc Finger Protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle