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Protein Overview: gi|9294279, gi|1...

General Information:
Name(s) found: gi|9294279 [NCBI NR]
gi|15233054 [NCBI NR]
Description(s) found:
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  • gi|9294279|dbj|BAB02181.1| Ta11-like non-LTR retroelement protein-like; CHP-rich zinc finger protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15233054|ref|NP_189506.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9LJJ0) Ta11-like non-LTR retroelement protein-like, CHP-rich zinc finger protein-like [athaliana3702.FASTAC.txt]
  • Ta11-like non-LTR retroelement protein-like; CHP-rich zinc finger protein-like [Arabidopsis thaliana]gi|15233054|ref|NP_189506.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr3:10736966-10738963 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Ta11-like non-LTR retroelement protein-like; CHP-rich zinc finger protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr3:10735729-10737726 FORWARD LENGTH=665 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=At3g28650 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 665 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRLEKHEH YVDLVKQRDG LECDVCDRSY GDGFYCSECK FTVHRKCAVV FLLKDIFDHP  60
   61 SHVGHYLKLL TTGAPDHTDP KCHLCGKNTK RILYHCSICK LNLDIDCIFD YFSDQQAHLN 120
  121 FSWHHHPLHF ISFRLHLQCD VCYMFRRKGY FCFQCKLVVH KECVSKIESA VITHPFHARH 180
  181 PLKLLTDGAP DYTDPKCHIC GVETANLLYH CDMCMFNLDI GCAIRNPERV SLSKLKVHEH 240
  241 TLTLMPKLMF FVCDACGMKG DHAPYVCVQC DFMFFHQKCA YLPRVINVNH HEHRVSYKYP 300
  301 LGPGDWICGV CWEEINWSYG AYSCSSCPNY AIHSRCATRK DVWDGKELDG VPELIEDIKP 360
  361 FKMNDDNTIT HFAHGHNLSL NKDTEEGSFC EACVLPIDSY TSYKCSKSDC CFILHETCAN 420
  421 FPKKKRHFLS PEPLTLRPQN QRKKESICRA CDQVFCQGFV YSTYRKRNFD LLCSSITMPF 480
  481 KHRSHDHHLL YLKLEVDHTK TCQNCGIDEK EVVLGCLKCN YFLDFRCATL PYTVRLPRYD 540
  541 DHPLTLCYGE KASGKYWCDI CERETNSKTW FYTCKGCGVT LHVFCVLGDI RYAKPGGSIN 600
  601 NNVELVPNNR SSRPLCHNCH CHCPGPFILK DFVEECFCSY YCFSRCKSWM SIVKKEKGIC 660
  661 PPWAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 4.30103 Crystal Structure of the Human Beta2-Chimaerin
    2 View Details [133..236] FFAS03 2.45 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [237..440] MSA 2.152987 View MSA. No confident structure predictions are available.
    4 View Details [441..588] PSI-BLAST 3.09691 No description for 2ysmA was found.
    5 View Details [589..665] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle