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Protein Overview: RRP4_ARATH

General Information:
Name(s) found: RRP4_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Exosome complex component RRP4 homolog OS=Arabidopsis thaliana GN=RRP4 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 322 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]
    exonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMRKLQLPL SQTQKVRFER AIERLQSLSS SANSDASVIV TDSIPVNHDD AFLKGHGTSE  60
   61 VDGELLATVC GVVERVDKLV YVRTLRARYK PEVGDIVVGR VIEVAQKRWR VELNFNQDGV 120
  121 LMLSSMNMPD GIQRRRTSVD ELNMRNIFVE HDVVCAEVRN FQHDGSLQLQ ARSQKYGKLE 180
  181 KGQLLKVDPY LVKRSKHHFH YVESLGIDLI IGCNGFIWVG EHVEVRDPMA IDDQKDEEMI 240
  241 SSSSTGKEQS HIPLETRQTI CRIGNAIRVL SNLGFTVTLE VIMETVNLSN SKNIDIHDML 300
  301 GSEFHVVVAE NEAERRRTKR KK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 62.69897 No description for 2nn6H was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.766407798661875 bayes_pls_golite062009
  • structural molecule activity
    		•  0.59387205224211 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.58294706356903 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.1608635436815 bayes_pls_golite062009
  • RNA binding
    		•  0.0205643208063799 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle