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Protein Overview: gi|10177199, gi|...

General Information:
Name(s) found: gi|15242053 [NCBI NR]
gi|10177199 [NCBI NR]
Description(s) found:
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  • gi|15242053|ref|NP_199944.1| gibberellin 20-oxidase-related [Arabidopsis thaliana] [NCBI NR]
  • gi|10177199|dbj|BAB10331.1| gibberellin 20-oxidase-like protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FGV8) Gibberellin 20-oxidase-like protein [athaliana3702.FASTAC.txt]
  • gibberellin 20-oxidase-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Gibberellin 20-oxidase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | gibberellin 20-oxidase-related | chr5:20870080-20871944 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • iron ion binding / isopenicillin-N synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • gibberellin 20-oxidase-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 333 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gibberellin biosynthetic process [IDA]
    Molecular Function: iron ion binding [IEA]
    oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLELPVFDI SKPLSESSLT SLQDACKEWG FFYVTNHGVS RDMYKKLRRF STGVFELEDE  60
   61 EKMKMGASNY TPRFIASPFF ESLRVSGPDF YASAKSSVDA FSDQATDEEF RYIHIYDIDG 120
  121 LMKEYGEKMT KLCEKIMKAI LSSFGDDLHH KYYESEFGNC HGYFRINNYT IPSDQEDDHH 180
  181 NGDEQDLIEG LGMHTDMSCI TIVDQDDIGG LQVRTRDGIG LMDINPKDEA LVVNVGDLLH 240
  241 AWTNGRLRSS QHRVILKRRG FVGNRFSLAF FWCFDDGKVV FAPDEVVGGC EGMRVFRSFK 300
  301 CGDYLRFRES NEKGKFEKVG DTVEDFARIE DRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..333] PSI-BLAST 77.045757 The structure of ACC oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.921320409505 bayes_pls_golite062009
  • binding
    		•  0.588242505102319 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0678642854814351 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle