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Protein Overview: MS1_ARATH

General Information:
Name(s) found: MS1_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 672 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: pollen wall assembly [IMP]
    microgametogenesis [IMP]
    regulation of transcription, DNA-dependent [ISS]
    tapetal layer morphogenesis [IMP]
    pollen germination [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLIRTDHQ QHIPKKRKRG ESRVFRLKTF GESGHPAEMN ELSFRDNLAK LLEFGHFESS  60
   61 GLMGSWSFQL EIQRNPNPLY VLLFVVEEPI EASLNLRCNH CQYVGWGNQM ICNKKYHFVI 120
  121 PSKETMAAFL KLEGGGYAFP EKESFSHLVE LQGHVLHGFF HSNGFGHLLS LNGIETGSDL 180
  181 TGHQVMDLWD RLCTGLKARK IGLNDASHKK GMELRLLHGV AKGEPWFGRW GYRFGSGTYG 240
  241 VTQKIYEKAL ESVRNIPLCL LNHHLTSLNR ETPILLSKYQ SLSTEPLITL SDLFRFMLHL 300
  301 HSRLPRDNYM SNSRNQIISI DSTNCRWSQK RIQMAIKVVI ESLKRVEYRW ISRQEVRDAA 360
  361 RNYIGDTGLL DFVLKSLGNQ VVGNYLVRRS LNPVKKVLEY SLEDISNLLP SSNNELITLQ 420
  421 NQNSMGKMAT NGHNKITRGQ VMKDMFYFYK HILMDYKGVL GPIGGILNQI GMASRAILDA 480
  481 KYFIKEYHYI RDTSAKTLHL DRGEELGIFC TIAWKCHHHN NEIKVPPQEC IVVKKDATLS 540
  541 EVYGEAERVF RDIYWELRDV VVESVVGGQI EITRVDEMAL NGNKGLVLEG NVGMMMNIEV 600
  601 TKCYEDDDKK KDKRIECECG ATEEDGERMV CCDICEVWQH TRCVGVQHNE EVPRIFLCQS 660
  661 CDQHLIPLSF LP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] deduced N/A No confident structure predictions are available.
    2 View Details [197..319] MSA 2.020965 View MSA. No confident structure predictions are available.
    3 View Details [320..493] MSA 3.414979 View MSA. No confident structure predictions are available.
    4 View Details [494..611] deduced N/A No confident structure predictions are available.
    5 View Details [612..672] PSI-BLAST 12.69897 Solution structure of PHD domain in PHD finger family protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle