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Protein Overview: gi|8777424, gi|1...

General Information:
Name(s) found: gi|8777424 [NCBI NR]
gi|15240582 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|8777424|dbj|BAA97014.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15240582|ref|NP_199804.1| emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1080 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    Molecular Function: nucleic acid binding [IEA][ISS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM  60
   61 ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ LGYDRIIVFQ FGLGANAHYV 120
  121 ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES 180
  181 LTAFVLKDHD AKQIEPKEQN GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD 240
  241 AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT 300
  301 SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS 360
  361 LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA AILAVRVALA KGMGWDDLAR 420
  421 MVKEEKKLGN PVAGVIDRLY LEKNCMTLLL CNNLDEMDDD EKTVPVEKVE VDLSLSAHGN 480
  481 ARRWYEMKKK QETKQEKTVS AHEKAFRAAE KKTRHQLSQE KVVATISHMR KVHWFEKFNW 540
  541 FISSENYLVI SGRDAQQNEM IVKRYMSKGD LYVHAELHGA SSTVIKNHKP EQNVPPLTLN 600
  601 QAGCFTVCHS QAWDSKIVTS AWWVYPHQVT KTAPTGEYLT VGSFMIRGKK NFLPPHPLIM 660
  661 GFGLLFRLDE SSLGAHLNER RVRGEEEGMN DVVMETHAPD EHSDTESENE AVNEVVSASG 720
  721 EVDLQESSTA LSQDTSSLDM SSSGITEENV ASATSQLEDL LDRTLGLGAA TVAGKKDTIE 780
  781 TSKDDMEEKM KQEEKNAVVR DKPYMSKAER RKLKMGQSGN TAADGNTGQE KQQRKEKDVS 840
  841 SLSQATKSIP DNKPAGEKVS RGQRGKLKKM KEKYADQDED ERKIRMALLA SSGKPQKTDV 900
  901 ESQNAKTAVT EVKKPSEETD DAVKICYRCK KVGHLARDCH GKETSDMDKV VMEEDDIHEV 960
  961 GDEEKEKLID VDYLTGNPLP TDILLYAVPV CGPYNALQSY KYRVKAIPGS MKKGKAAKTA1020
 1021 MNLFTHMSEA SVREKELMKA CTDPELMAAL VGNVKITAAG LTQLKQKQKK GKKSGKQQHS1080
 1081

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..412] PSI-BLAST 36.09691 No description for 3doaA was found.
    2 View Details [413..504] deduced N/A No confident structure predictions are available.
    3 View Details [505..666] Pfam 48.431798 No description for PF05670.5 was found. No confident structure predictions are available.
    4 View Details [667..736] deduced N/A No confident structure predictions are available.
    5 View Details [737..1080] PSI-BLAST 6.39794 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle