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Protein Overview: gi|133778846, gi...

General Information:
Name(s) found: gi|6729007 [NCBI NR]
gi|15231356 [NCBI NR]
gi|133778846 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|6729007|gb|AAF27004.1|AC016827_15 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231356|ref|NP_187356.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|133778846|gb|ABO38763.1| At3g07000 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 574 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPITDQPMD QPKQKVKIPC NHMLLYIHLT QSYSYCAVCN GDYGLCYYCS RCNFQAHSEC  60
   61 IEWPDTIDHP SHSRHPLKKV SPGTIDYTDG KCHFCREELV DPMYHCSLCN FSIDVNCWRH 120
  121 PPQRTIYQPK SHEHTFTLMP RKITFTCNAC GMLGDCNPYF CFECGFMLHK DCIDLPRVIN 180
  181 INRHDHRISR TYHLGHGDWG SCGVCRKEID WSLGAYSCKR CPNYAVHSKC AIREDVWNGE 240
  241 ELEDVPEEEE EIEDPYKVVN DKEIIHFCHE EHNLRLGGDD DVTGYEKMLC DACITPISSD 300
  301 PFFKCVQCEF FLHKVCASLP RRKRNIMHTE KLDLQVTKAG EYNKCISCRK IFDGFRYCSR 360
  361 FEKFDVRCGS ISEPFHHELH PHPLYHILSA AEKLKLCGAC GKYLHYVLSC TVCEFNLGMD 420
  421 CATLPRKVRH ICDAHDLSLH HVPGNSKGQQ LWCDSCEGKL DPSVWFYGCD DCGSTLHIKC 480
  481 VLGDFNHLKP GKKYGEAELV VNDGMTRPFC ISCKKRCSFP SFLKATCPNT LCEQRWGFPS 540
  541 FLKAASPDSF VLFACSMDCA YDKYFMLWFY EVDY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] FFAS03 1.29 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    2 View Details [82..131] PSI-BLAST 4.0 Crystal Structure of the Human Beta2-Chimaerin
    3 View Details [132..243] PSI-BLAST 4.0 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    4 View Details [244..340] PSI-BLAST 9.39794 No description for 2ysmA was found.
    5 View Details [341..429] FFAS03 2.27 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    6 View Details [430..489] PSI-BLAST 4.69897 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    7 View Details [490..574] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    6
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle