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Protein Overview: GAT21_ARATH

General Information:
Name(s) found: GAT21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8809654|dbj|BAA97205.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|71660831|sp|Q5HZ36.2|GAT24_ARATH RecName: Full=GATA transcription factor 24 [NCBI NR]
  • gi|15241967|ref|NP_200497.1| GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|109134121|gb|ABG25059.1| At5g56860 [Arabidopsis thaliana] [NCBI NR]
  • GATA transcription factor 24 OS=Arabidopsis thaliana GN=At5g56860 PE=2 SV=2 [Swiss-Prot]
  • GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2 [Swiss-Prot]
  • (Q9LV39) Genomic DNA, chromosome 5, P1 clone:MPI10 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15241967|ref|NP_200497.1| zinc finger (GATA type) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of GATA transcription factor 24 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GNC | GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED); transcription factor | chr5:23006856-23008577 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g56860 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GATA transcription factor 24 [nr-271106-contam.fasta]
  • | Symbols: GNC, GATA21 | GATA type zinc finger transcription factor family protein | chr5:22989630-22991351 REVERSE LENGTH=398 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 398 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: regulation of nitrogen compound metabolic process [IEP][IMP]
    glucose mediated signaling pathway [IMP]
    circadian rhythm [IEP]
    response to light stimulus [IEP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY  60
   61 LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG SSACDHMVPK KETRLKLTIR 120
  121 KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP 180
  181 LNHKTNFDED HHEDLNFKNV LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT 240
  241 PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK 300
  301 RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF 360
  361 DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] FFAS03 1.08 Crystal structure of Alr0975
    2 View Details [226..303] PSI-BLAST 14.39794 Erythroid transcription factor GATA-1
    3 View Details [304..398] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.465394995609075 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.270879137859077 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle