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Protein Overview: Y5880_ARATH

General Information:
Name(s) found: Y5880_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758879|dbj|BAB09433.1| non-phototropic hypocotyl-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75262602|sp|Q9FKB6.1|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 [NCBI NR]
  • gi|15239705|ref|NP_199691.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [NCBI NR]
  • BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=2 SV=1 [Swiss-Prot]
  • (Q9FKB6) Non-phototropic hypocotyl-like protein [athaliana3702.FASTAC.txt]
  • non-phototropic hypocotyl-like protein [Arabidopsis thaliana]gi|15239705|ref|NP_199691.1| phototropic-responsive NPH3 family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Phototropic-responsive NPH3 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | phototropic-responsive NPH3 family protein | chr5:19804107-19806229 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • non-phototropic hypocotyl-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / signal transducer [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19786881-19789003 FORWARD LENGTH=614 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 614 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: response to light stimulus [IEA][ISS]
    Molecular Function: protein binding [IEA]
    signal transducer activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP  60
   61 LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK FCYGINFEIT SSNVAQLFCV 120
  121 SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA 180
  181 IASKACAEQI ASSFSRLEYS SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM 240
  241 KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV 300
  301 ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD 360
  361 SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN LDLSKFLLIA EALPPHARTL 420
  421 HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF 480
  481 EQLKLRSSLC SSYSDEEPKP KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA 540
  541 RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT 600
  601 DSKVLMERTC ASTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..206] PSI-BLAST 21.0 No description for 2nn2A was found.
    2 View Details [207..284] deduced N/A No confident structure predictions are available.
    3 View Details [285..337] PSI-BLAST 4.045757 No description for 2dyhA was found.
    4 View Details [338..435] deduced N/A No confident structure predictions are available.
    5 View Details [436..509] MSA 3.077994 View MSA. No confident structure predictions are available.
    6 View Details [510..614] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle