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Protein Overview: SDN1_ARATH

General Information:
Name(s) found: SDN1_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: miRNA catabolic process [IDA]
    Molecular Function: 3'-5' exonuclease activity [IDA]
    exonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKLATAEK QVLDELVKLL QSRDLRGENG NWKEFLHVYD KNADSPSDPS RRSHEDLVQF  60
   61 LTTFKKKEDL QLLKCHANHL LIENLKQESQ DEDTPEQMLV RLTVEHPSYS LDYSFKPYSE 120
  121 DWFVSDVGMK MKKVMESTNM VAVDCEMVLC EDGTEGLVRV GVVDRDLKVI LDEFVKPNKP 180
  181 VVDYRTDITG ITAEDIENAS LSVVDIQETL QPFLSTGTIL VGHSLNRDLE VLKIDHPKVI 240
  241 DTALVFKYPN TRKLRRPSLN NLCKSILGYE VRKTGVPHDC VHDASAAMKL ALAVVEKRVD 300
  301 TTIKPSKEML EVEKAKLFLH KIPNNVPSEE LEQVLSGKFT LDVKQAKTQG RYYCAFALFH 360
  361 SSEDADQAFE HIDGIEMTDS LGLPQKVVII KLSSGSRASI YVRKMVQDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] MSA 1.488991 View MSA. No confident structure predictions are available.
    2 View Details [131..319] PSI-BLAST 34.522879 No description for 2p1jA was found.
    3 View Details [320..409] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle