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Protein Overview: gi|3912924, gi|7...

General Information:
Name(s) found: gi|7486844 [NCBI NR]
gi|7268603 [NCBI NR]
gi|3912924 [NCBI NR]
gi|15235267 [NCBI NR]
Description(s) found:
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  • pir||T01520 hypothetical protein T10M13.18 - Arabidopsis thaliana [NCBI NR]
  • gi|7268603|emb|CAB80712.1| CHP-rich hypothetical protein similar to T10M13.17.1 [Arabidopsis thaliana] [NCBI NR]
  • gi|3912924|gb|AAC78708.1| CHP-rich hypothetical protein similar to T10M13.17.1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15235267|ref|NP_192128.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (O04257) CHP-rich hypothetical protein similar to T10M13.17.1 [athaliana3702.FASTAC.txt]
  • CHP-rich hypothetical protein similar to T10M13.17.1 [Arabidopsis thaliana]gi|3912924|gb|AAC78708.1| CHP-rich hypothetical protein similar to T10M13.17.1 [Arabidopsis thaliana]gi|7486844|pir||T01520 hypothetical protein T10M13.18 - Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr4:967372-969351 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CHP-rich hypothetical protein similar to T10M13.17.1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr4:967372-969351 FORWARD LENGTH=659 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T10M13.18 PE=4 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 659 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEGVLLRL IHEHSMIPCN HLRKGDCCGR FEAISDGYYC KTCDFFVHKK CVDEASESIE  60
   61 HPSHPGHTLQ LLSKQKYRYC NLCGRDIKDL CYHFGNFDVD LYCAKYPPPE VIESSETPCH 120
  121 KRTLLKEKIE FHCDAKCEEI GYGFPYKCLE CGLTFHIDCV LHPSGVKHLP EVIHPLDVKN 180
  181 HSCHPLHPLK LVLTGQLPDY SDGKCRLCEK KIDSPLFYHC SPCNFTLDMR CALNPPSISF 240
  241 EDSKTHDHQL TLLPRLDSFT CNACGLKGDR SPYICVQCNF IIHQECLTLP RLININRHDH 300
  301 RVARTNLLGL VYSVCGVCRQ KVDWTWGGYS CQRCSNYVVH SKCATRKDVW NGKELEGVIE 360
  361 ETEDIEPYVV IDDNTIQHFS HEEHYLKLDD NGVLCDENKR CSACTHSVCL ESFYGCMDCD 420
  421 FILHQNCAKF PKRKRHVLHN ERLTLFTREA GHFWCNVCGR ISNGFSYQYG DMKLDVICCS 480
  481 VLEPFVHPSH PDHPLYYISP EMEEVCNGCN MSGTRMLRCI EDGCGFVLCF KCATLPRVLK 540
  541 HRVDDYPLLL CYGEKANGIY WCEICEKKMN PEKWFYTCKD QWASLHTECV VGDFSGLMPG 600
  601 SVVKAETGSY EVVLNKNVSR PFCRQCKSHC MYPIIYKIPE TSVSYLCSDI CIKRFTKRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] PSI-BLAST 4.39794 No description for 2ysmA was found.
    2 View Details [128..245] PSI-BLAST 3.39794 Crystal Structure of the Human Beta2-Chimaerin
    3 View Details [246..545] FFAS03 1.1 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
    4 View Details [546..594] PSI-BLAST 3.522879 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    5 View Details [595..659] FFAS03 1.0 No description for 2dasA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    5
    Term Confidence Notes
  • binding
    		•  0.175200369479833 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle