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Protein Overview: LRX6_ARATH

General Information:
Name(s) found: LRX6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9279698|dbj|BAB01255.1| extensin protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|219291096|gb|ACL13984.1| At3g22800 [Arabidopsis thaliana] [NCBI NR]
  • gi|15228861|ref|NP_188919.1| leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] [NCBI NR]
  • Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1 [Swiss-Prot]
  • (Q9LUI1) Extensin protein-like [athaliana3702.FASTAC.txt]
  • extensin protein-like [Arabidopsis thaliana]gi|15228861|ref|NP_188919.1| leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Leucine-rich repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | leucine-rich repeat family protein / extensin family protein | chr3:8063070-8064482 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / structural constituent of cell wall [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • extensin protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:8063063-8064475 REVERSE LENGTH=470 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 470 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: NONE FOUND
    Molecular Function: protein binding [ISS]
    structural constituent of cell wall [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREDTFFFQW WFLVSGLSFI FLLPQAFTYH TPPINPCFAH PFLPPITNPR LLKAFTALQA  60
   61 WKFTITSDPN GFTSNWCGPN VCNYTGVFCA PALDNPYVLT VAGIDLNHAN IAGYLPLELG 120
  121 LLTDLALFHI NSNRFQGQLP KTLKCLHLLH ELDVSNNKLS GEFPSVIFSL PSLKFLDIRF 180
  181 NEFQGDVPSQ LFDLNLDALF INDNKFQFRL PRNIGNSPVS VLVLANNDLQ GSCVPPSFYK 240
  241 MGKTLHEIII TNSQLTGCLN REIGLLNQLT VFDVSYNNLV GSLPETIGDM KSLEQLNIAH 300
  301 NKFSGYIPES ICRLPRLENF TYSYNFFSGE PPACLRLQEF DDRRNCLPSR PMQRSLAECK 360
  361 SFSSYPIDCA SFGCSPPSPP PPPPPPPPPP PPPPPPPPPP PPPPPPPYVY PSPPPPPPSP 420
  421 PPYVYPPPPP PYVYPPPPSP PYVYPPPPPS PQPYMYPSPP CNDLPTPVHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..372] PSI-BLAST 38.045757 Polygalacturonase inhibiting protein PGIP
    2 View Details [373..470] FFAS03 1.55 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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