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Protein Overview: LRX1_ARATH

General Information:
Name(s) found: LRX1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3157926|gb|AAC17609.1| Strong similarity to extensin-like protein gb|Z34465 from Zea mays. [Arabidopsis thaliana] [NCBI NR]
  • pir||E86255 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221178|ref|NP_172668.1| LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall [Arabidopsis thaliana] [NCBI NR]
  • gi|13809918|gb|AAK07681.1| leucine-rich repeat/extensin 1 [Arabidopsis thaliana] [NCBI NR]
  • Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1 [Swiss-Prot]
  • (O65375) F12F1.9 protein (Leucine-rich repeat/extensin 1) [athaliana3702.FASTAC.txt]
  • leucine-rich repeat/extensin 1 [Arabidopsis thaliana]gi|3157926|gb|AAC17609.1| Strong similarity to extensin-like protein gb|Z34465 from Zea mays. [Arabidopsis thaliana]gi|25402701|pir||E86255 hypothetical protein [imported] - Arabidopsis thalianagi|15 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Leucine-rich repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LRX1 | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); protein binding / structural constituent of cell wall | chr1:4070158-4072392 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Strong similarity to extensin-like protein gb|Z34465 from Zea mays. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • leucine-rich repeat/extensin 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LRX1 | leucine-rich repeat/extensin 1 | chr1:4070160-4072394 FORWARD LENGTH=744 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 744 amino acids

    Gene Ontology:
    Cellular Component: plant-type cell wall [IDA]
    Biological Process: unidimensional cell growth [IMP]
    trichoblast differentiation [IMP]
    cell morphogenesis involved in differentiation [IMP]
    Molecular Function: histidine phosphotransfer kinase activity [NAS]
    protein binding [ISS]
    structural constituent of cell wall [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPPLRSLF LFTLLLSSVC FLQIKADHDD ESDLGSDIKV DKRLKFENPK LRQAYIALQS  60
   61 WKKAIFSDPF NFTANWNGSD VCSYNGIYCA PSPSYPKTRV VAGIDLNHAD MAGYLASELG 120
  121 LLSDLALFHI NSNRFCGEVP LTFNRMKLLY ELDLSNNRFV GKFPKVVLSL PSLKFLDLRY 180
  181 NEFEGKIPSK LFDRELDAIF LNHNRFRFGI PKNMGNSPVS ALVLADNNLG GCIPGSIGQM 240
  241 GKTLNELILS NDNLTGCLPP QIGNLKKVTV FDITSNRLQG PLPSSVGNMK SLEELHVANN 300
  301 AFTGVIPPSI CQLSNLENFT YSSNYFSGRP PICAASLLAD IVVNGTMNCI TGLARQRSDK 360
  361 QCSSLLARPV DCSKFGCYNI FSPPPPTFKM SPEVRTLPPP IYVYSSPPPP PSSKMSPTVR 420
  421 AYSPPPPPSS KMSPSVRAYS PPPPPYSKMS PSVRAYPPPP PPSPSPPPPY VYSSPPPPYV 480
  481 YSSPPPPPYV YSSPPPPPYV YSSPPPPYVY SSPPPPYVYS SPPPPPPSPP PPCPESSPPP 540
  541 PVVYYAPVTQ SPPPPSPVYY PPVTQSPPPP SPVYYPPVTN SPPPPSPVYY PPVTYSPPPP 600
  601 SPVYYPQVTP SPPPPSPLYY PPVTPSPPPP SPVYYPPVTP SPPPPSPVYY PPVTPSPPPP 660
  661 SPVYYPSETQ SPPPPTEYYY SPSQSPPPTK ACKEGHPPQA TPSYEPPPEY SYSSSPPPPS 720
  721 PTSYFPPMPS VSYDASPPPP PSYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..426] PSI-BLAST 47.0 No description for 2omuA was found.
    2 View Details [427..504] deduced N/A No confident structure predictions are available.
    3 View Details [505..674] MSA 2.172994 View MSA. No confident structure predictions are available.
    4 View Details [675..744] FFAS03 0.972 Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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