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Protein Overview: gi|25408548, gi|...

General Information:
Name(s) found: gi|4056493 [NCBI NR]
gi|25408548 [NCBI NR]
gi|18404409 [NCBI NR]
gi|114050659 [NCBI NR]
Description(s) found:
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  • gi|4056493|gb|AAC98059.1| chloroplast lumen common protein family [Arabidopsis thaliana] [NCBI NR]
  • pir||C84792 hypothetical protein At2g37400 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18404409|ref|NP_565860.1| chloroplast lumen common family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|114050659|gb|ABI49479.1| At2g37400 [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZUS6) At2g37400 protein [athaliana3702.FASTAC.txt]
  • chloroplast lumen common protein family [Arabidopsis thaliana]gi|25408548|pir||C84792 hypothetical protein At2g37400 [imported] - Arabidopsis thalianagi|18404409|ref|NP_565860.1| chloroplast lumen common family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chloroplast lumen common family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | chloroplast lumen common family protein | chr2:15703444-15704445 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g37400 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • chloroplast lumen common protein family [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15696365-15697366 REVERSE LENGTH=333 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g37400 OS=Arabidopsis thaliana GN=At2g37400 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 333 amino acids

    Gene Ontology:
    Cellular Component: chloroplast envelope [IDA]
    chloroplast thylakoid lumen [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK  60
   61 LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM ESLKQSNGNV SFEEEERSLE 120
  121 EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL 180
  181 ESAKTGFEEI LVKDPLRVEA YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD 240
  241 FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR 300
  301 RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..333] PSI-BLAST 58.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.53

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle