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Protein Overview: CDA6_ARATH

General Information:
Name(s) found: CDA6_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Cytidine deaminase 6 OS=Arabidopsis thaliana GN=CDA6 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 293 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cytidine metabolic process [IEA]
    cytidine deamination [ISS]
    Molecular Function: zinc ion binding [IEA]
    catalytic activity [IEA]
    cytidine deaminase activity [IEA][ISS]
    hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVYTPSEA AEEGVRGPSD LPKLIDKAMS LARAPVSTFK VGAVGLTSSG EVFLGVNVEF  60
   61 PNLPLHHTIH AEQFLVTNLA LNSMKKLTHI AVSVTGTIFG APCGHCRQFY QEMRNAPEIE 120
  121 ILIKRPKDGI DEFMSLKSLM PERFGPDSIL PEDASLLLEQ RDNSLVLSDP EEICSDPEDC 180
  181 SHTKCRALAA ANKSYAPYSK CPSGVALICG GEVYKGWYIE SVAYNPSLGP VEAALVDFVA 240
  241 RGGGKEFNEI TEVVLVEMKD VKVSQEATAR TFLDKIAPKC DFKVLHCYKT NKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..293] PSI-BLAST 67.0 Two-domain cytidine deaminase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytidine deaminase activity
    		•  4.42667374679603 bayes_pls_golite062009
  • deaminase activity
    		•  2.76997916054448 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  2.27736397496642 bayes_pls_golite062009
  • catalytic activity
    		•  1.70756445127105 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  1.51294035758003 bayes_pls_golite062009
  • IMP cyclohydrolase activity
    		•  1.11605611485835 bayes_pls_golite062009
  • phosphoribosylaminoimidazolecarboxamide formyltransferase activity
    		•  0.827438033765078 bayes_pls_golite062009
  • hydrolase activity
    		•  0.339145951258927 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  0.308525511259279 bayes_pls_golite062009
  • binding
    		•  0.255962198799579 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  0.1546696349714 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle