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Protein Overview: C3H22_ARATH

General Information:
Name(s) found: C3H22_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75206386|sp|Q9SK49.1|C3H22_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 22; Short=AtC3H22 [NCBI NR]
  • gi|4559368|gb|AAD23029.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A84641 hypothetical protein At2g24830 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15224627|ref|NP_180056.1| zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110738260|dbj|BAF01059.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana GN=At2g24830 PE=2 SV=1 [Swiss-Prot]
  • (Q9SK49) At2g24830 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|25412253|pir||A84641 hypothetical protein At2g24830 [imported] - Arabidopsis thalianagi|15224627|ref|NP_180056.1| zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (CCCH-type) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein | chr2:10584072-10586233 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein | chr2:10576993-10579154 REVERSE LENGTH=497 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 497 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA IKEVEEGLLH  60
   61 LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD GSKCRFRHTD GRWYNGRIIG 120
  121 FEGSDSAKIS FLTPTSESMM ICKFFMQQRC RFGSSCRSSH GLDVPISSLK NYEQTEWKQL 180
  181 MVGSKIWAVS GSKYDIWRKA ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD 240
  241 DDGEEEEEED EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT 300
  301 RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN GECKSEKQKK 360
  361 KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF PTRHEKVHSE SVKNRQNKGP 420
  421 VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN KKDLVVSEAA TRRLKEVRKA LASTLACQAA 480
  481 ASNAIVSKEN EKKWLKF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 20.522879 No description for 2hqeA was found.
    2 View Details [157..342] MSA 12.309995 View MSA. No confident structure predictions are available.
    3 View Details [343..497] FFAS03 1.1 crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.346102840207765 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle