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Protein Overview: gi|12323814, gi|...

General Information:
Name(s) found: gi|25406318 [NCBI NR]
gi|15221160 [NCBI NR]
gi|12323814 [NCBI NR]
Description(s) found:
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  • pir||H96769 hypothetical protein F9E11.7 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221160|ref|NP_177557.1| leucine-rich repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana] [NCBI NR]
  • (Q9C6A6) Disease resistance protein, putative [athaliana3702.FASTAC.txt]
  • hypothetical protein F9E11.7 [imported] - Arabidopsis thalianagi|12323814|gb|AAG51873.1| disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]gi|15221160|ref|NP_177557.1| leucine-rich repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Leucine-rich repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1068 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: signal transduction [IC]
    Molecular Function: protein binding [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKLFLGQY LICVILLLGQ LHGYKSCIEK ERKALLELKA FLIPLNAGEW NDNVLSWTND  60
   61 TKSDCCQWMG VECNRKSGRI TNIAFGIGFI IENPLLNLSL LHPFEDVRSL DLSSSRSCED 120
  121 CGFSGLFDDV EGYKSLSRLR NLEILDLSSH RFNNSIFPFL NAATSLTTLF LTYNNMHSPF 180
  181 LVKEFKDLTN LEHLDLRGNR FNGSIPTQDY NSLRRFRKLE ILDLSDNLFN SRIFPFLNSA 240
  241 TSLKSLSLWG NNMGGPFPAK ELRDLTNVEL LDLSRNRFNG SIPVRALFAL RKLKALDLSD 300
  301 NEFSSSVELQ GKFAKTKPLS GTCPWKNMEE LKLSNNKLAG QFPLCLTSLT GLRVLDLSSN 360
  361 QLTGNVPSAL ANLESLEYLS LFGNNFEGFF SLGLLANLSK LKVLRLDSQS NSLEVEFETS 420
  421 WKPKFQLVVI ALRSCNLEKV PHFLLHQKDL HHVDLSDNQI HGNFPSWLLE NNTKLEVLLL 480
  481 QNNSFTSFQL PKSAHNLLFL NVSVNKFNHL FLQNFGWILP HLVCVNLAYN GFQGNLPSSL 540
  541 DNMKSIEFLD LSHNRFHGKL PRRFLKGCYN LTILKLSHNK LSGEVFPEAA NFTRLWVMSM 600
  601 DNNLFTGNIG KGFRSLPSLN VLDISNNKLT GVIPSWIGER QGLFALQLSN NMLEGEIPTS 660
  661 LFNISYLQLL DLSSNRLSGD IPPHVSSIYH GAVLLLQNNN LSGVIPDTLL LNVIVLDLRN 720
  721 NRLSGNLPEF INTQNISILL LRGNNFTGQI PHQFCSLSNI QLLDLSNNKF NGSIPSCLSN 780
  781 TSFGLRKGDD SYRYDVPSRF GTAKDPVYFE SLLMIDEFNM VNETNSQTKI EFATKHRYDA 840
  841 YMGGNLKLLF GMDLSENELS GEIPVELGGL VELEALNLSH NNLSGVILES FSGLKNVESL 900
  901 DLSFNRLQGP IPLQLTDMIS LAVFNVSYNN LSGIVPQGRQ FNTFETQSYF GNPLLCGKSI 960
  961 DISCASNNFH PTDNGVEADE STVDMESFYW SFVAAYVTIL LGILASLSFD SPWSRAWFYI1020
 1021 VDAFVLKVRN MLWQNTAGTK CSYVLVSLSS PSVVVLLKPP ALFHKTRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] PSI-BLAST 42.045757 No description for 2z63A was found.
    2 View Details [163..630] PSI-BLAST 18.522879 Ribonuclease inhibitor
    3 View Details [631..968] PSI-BLAST 31.30103 No description for 2id5A was found.
    4 View Details [969..1068] PSI-BLAST 3.39794 No description for 2nruA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  2.84127269195072 bayes_pls_golite062009
  • binding
    		•  2.2362578005784 bayes_pls_golite062009
  • actin binding
    		•  1.83229753790722 bayes_pls_golite062009
  • protein binding
    		•  1.61093336454573 bayes_pls_golite062009
  • tropomyosin binding
    		•  0.826640590422063 bayes_pls_golite062009
  • catalytic activity
    		•  0.143741655309638 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle