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Protein Overview: gi|110738487, gi...

General Information:
Name(s) found: gi|9759539 [NCBI NR]
gi|15242956 [NCBI NR]
gi|110738487 [NCBI NR]
Description(s) found:
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  • gi|9759539|dbj|BAB11005.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15242956|ref|NP_200621.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110738487|dbj|BAF01169.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FGT1) Genomic DNA, chromosome 5, TAC clone:K21L19 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242956|ref|NP_200621.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:23538416-23540992 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:23521190-23523766 REVERSE LENGTH=748 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At5g58130 OS=Arabidopsis thaliana GN=ROS3 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 748 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: gene silencing [IMP]
    DNA demethylation [IMP]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKSSGGGV RLHVGGLGES VGRDDLLKIF SPMGTVDAVE FVRTKGRSFA YIDFSPSSTN  60
   61 SLTKLFSTYN GCVWKGGRLR LEKAKEHYLA RLKREWEAAS STSDNTIKAP SDSPPATHLN 120
  121 IFFPRLRKVK PMPLSGTGKH KYSFQRVPVS SSLPRSFCDC EEHSNSSLTP REIHLHDLEA 180
  181 VNVGRQEAEV NVMNSVMNKL FEKNNVDPEE DNEIEADQDN LIINVASSGN DMDSALDMLS 240
  241 RKRKSILNKK TPSEEGYSEG RKGNLTHPSK NRQTISLEET GRQESSQAIR GKKKPSEVVP 300
  301 DKSSDEPSRT KDLEQSIDNI SWSQKSSWKS LMANGNSNDF SVSSFLPGVG SSKAVQPAPR 360
  361 NTDLAGLPSR ENLKKKTKRK RVTSTIMAED LPVSDDIKRD DSDTMADDIE RDDSDAVEYY 420
  421 TACESMADDT ASDSVAERDD SDAVEDDTAI DSMADDPASD SVAESDDGDA VENDTAIDSM 480
  481 ADDTVSNSMA ESDDGDNVED DTAIDSMCDD TANDDVGSDD SGSLADTVSD TSVEAVPLEF 540
  541 VANTEGDSVD GKSNVEKHEN VAEDLNAEKE SLVVKENVVD EEEAGKGPLK ASNKSTGGSS 600
  601 WLQKASWTQL VSDKNTSSFS ITQLFPDLTS DKGEAAGVIN NVGNQFSNSN QTASAMKQTD 660
  661 YASSSGGFVA AGVPVDSTPV RSLDENRQRL NGKNVSEGAK LGAKKKIIKR KVGSGDTCTF 720
  721 MRSSTSLKEW AKAKKALSEP RRKKNSEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] PSI-BLAST 28.09691 Poly(A)-binding protein
    2 View Details [170..236] deduced N/A No confident structure predictions are available.
    3 View Details [237..369] deduced N/A No confident structure predictions are available.
    4 View Details [370..572] deduced N/A No confident structure predictions are available.
    5 View Details [573..748] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle