YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NDS8B_ARATH

General Information:
Name(s) found: NDS8B_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|9989050|gb|AAG10813.1|AC011808_1 Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • pir||C86302 probable NADH-ubiquinone oxidoreductase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21553581|gb|AAM62674.1| NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • gi|15219311|ref|NP_173114.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative [Arabidopsis thaliana] [NCBI NR]
  • NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial OS=Arabidopsis thaliana GN=At1g16700 PE=2 SV=1 [Swiss-Prot]
  • (Q9FX83) Putative NADH-ubiquinone oxidoreductase (NADH:ubiquinone oxidoreductase, putative) [athaliana3702.FASTAC.txt]
  • NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana]gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]gi|15219311 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 NADH-ubiquinone oxidoreductase 23 kDa subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATMLO14 | ATMLO14 (ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14); NADH dehydrogenase (ubiquinone) | chr1:5710005-5711687 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • NADH dehydrogenase (ubiquinone)/ electron transporter/ iron ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Alpha-helical ferredoxin | chr1:5710012-5711694 FORWARD LENGTH=222 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial OS=Arabidopsis thaliana GN=At1g16700 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 222 amino acids

    Gene Ontology:
    Cellular Component: respiratory chain complex I [IDA]
    mitochondrion [IDA]
    Biological Process: NONE FOUND
    Molecular Function: metal ion binding [IDA]
    NADH dehydrogenase (ubiquinone) activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLARRSF SALRARHLAF SGQGLQGSHL CGLQSRAISY GSNKDDEEAE QLAKEISKDW  60
   61 STVFERSMNT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK GPLSPRFRGE HALRRYPTGE 120
  121 ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG 180
  181 PNFEFATETH EELLYDKEKL LENGDRWETE IAENLRSESL YR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..222] PSI-BLAST 22.30103 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • NADH dehydrogenase activity
    		•  12.5726198200461 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  11.5379710261128 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  11.4267068380664 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  10.7661444048967 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  10.0573871968611 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.95698221294919 bayes_pls_golite062009
  • electron carrier activity
    		•  5.42600867641421 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  4.00434209032307 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  3.32581564966388 bayes_pls_golite062009
  • metal cluster binding
    		•  3.32581564966388 bayes_pls_golite062009
  • oxidoreduction-driven active transmembrane transporter activity
    		•  3.29174700910768 bayes_pls_golite062009
  • formate dehydrogenase activity
    		•  2.79579164562277 bayes_pls_golite062009
  • binding
    		•  0.901527244621498 bayes_pls_golite062009
  • catalytic activity
    		•  0.488483980994331 bayes_pls_golite062009
  • protein binding
    		•  0.429260499627782 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor
    		•  0.115812441015069 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  0.0827182678048914 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle