Protein Overview: NDS8B_ARATH

General Information:
Name(s) found:	NDS8B_ARATH [Swiss-Prot]
Description(s) found: Found 18 descriptions. SHOW ALL	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-B, mitochondrial OS=Arabidopsis thaliana GN=At1g16700 PE=2 SV=1 [Swiss-Prot]
Organism:	Arabidopsis thaliana
Length:	222 amino acids
Gene Ontology:
Cellular Component:	respiratory chain complex I [IDA] mitochondrion [IDA]
Biological Process:	NONE FOUND
Molecular Function:	metal ion binding [IDA] NADH dehydrogenase (ubiquinone) activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLARRSF SALRARHLAF SGQGLQGSHL CGLQSRAISY GSNKDDEEAE QLAKEISKDW  60
   61 STVFERSMNT LFLTEMVRGL SLTLKYFFDP KVTINYPFEK GPLSPRFRGE HALRRYPTGE 120
  121 ERCIACKLCE AVCPAQAITI EAEEREDGSR RTTRYDIDMT KCIYCGFCQE ACPVDAIVEG 180
  181 PNFEFATETH EELLYDKEKL LENGDRWETE IAENLRSESL YR

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..222]	PSI-BLAST	22.30103	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
NADH dehydrogenase activity	12.5726198200461	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	11.5379710261128	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	11.4267068380664	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	10.7661444048967	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	10.0573871968611	bayes_pls_golite062009
oxidoreductase activity	5.95698221294919	bayes_pls_golite062009
electron carrier activity	5.42600867641421	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	4.00434209032307	bayes_pls_golite062009
iron-sulfur cluster binding	3.32581564966388	bayes_pls_golite062009
metal cluster binding	3.32581564966388	bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity	3.29174700910768	bayes_pls_golite062009
formate dehydrogenase activity	2.79579164562277	bayes_pls_golite062009
binding	0.901527244621498	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009
protein binding	0.429260499627782	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor	0.115812441015069	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.0827182678048914	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

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