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Protein Overview: gi|4558545, gi|3...

General Information:
Name(s) found: gi|7487024 [NCBI NR]
gi|7268219 [NCBI NR]
gi|4558545 [NCBI NR]
gi|3859600 [NCBI NR]
gi|15234288 [NCBI NR]
Description(s) found:
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  • pir||T01999 hypothetical protein T15B16.6 - Arabidopsis thaliana [NCBI NR]
  • gi|7268219|emb|CAB77746.1| putative CHP-rich zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4558545|gb|AAD22638.1|AC007138_2 putative CHP-rich zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • gi|3859600|gb|AAC72866.1| T15B16.6 gene product [Arabidopsis thaliana] [NCBI NR]
  • gi|15234288|ref|NP_192085.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZSJ1) T15B16.6 protein (Putative CHP-rich zinc finger protein) [athaliana3702.FASTAC.txt]
  • putative CHP-rich zinc finger protein [Arabidopsis thaliana]gi|4558545|gb|AAD22638.1| putative CHP-rich zinc finger protein [Arabidopsis thaliana]gi|3859600|gb|AAC72866.1| T15B16.6 gene product [Arabidopsis thaliana]gi|7487024|pir||T01999 hypothetical [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr4:759131-761134 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CHP-rich zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • T15B16.6 gene product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr4:759131-761134 REVERSE LENGTH=667 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T15B16.6 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 667 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDGVSVPL IHEHLMMPCN DLRRGDCCER LEAISDGYYC TTCDFFVHKK CGDEASECIE  60
   61 NPFHSNHPLR LGFLSRLQRQ HWLKVVRSCD LCGKNIGDLF YRCEICDFDM DLHCAKYPPL 120
  121 EVIDIPEMHS HKLNLLKDRV EFDCDAKCGK IGYGFPYECH ECDSKFHVDC VRYSSSEEVK 180
  181 HPLEVNHSYH SLHPLKLLMG QPPDYSDGKC RLCGRKIDDK LFYHCSSCNF TLDMRCVLNP 240
  241 PPKSVLDLKT HDHQLNLLPR LIFFTCNACG LNGDRSPYAC FQCDFLIHKD CFGLPRLINI 300
  301 NRHDHRISRT SLIGIVNSVC GVCRQKVDWT CGGYSCQRCS TYIAHSKCAT REDVWNGKEL 360
  361 EGVPEEIEDI EPYVVIDDNT IQHFSHKEHY MRLNVNGLMC EVNKRCNACN HPISPQSFYG 420
  421 CMDCDFILHQ NCAGFPRRKW HVLHNERLAL VTSEVNIFGC SACHKIFNGF RYEHEDTKLD 480
  481 VLCGSFSEPF IHPSHPHHPL YCISPEDDEV CSGCNERSYH VLRCIEDNCG FILDFGCATF 540
  541 PQVVKHRIED QPLSLCYGEK ASGKYWCDIC EKETNPNTWF YTCKDHRASL HTWCVLGDFM 600
  601 GLIPKSTIEL WNISYEVVLN NSISRPICRH CKSHCIPPII LKKIGTSDPY FCSLDCIESF 660
  661 KRLWRAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] FFAS03 1.73 Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
    2 View Details [75..181] PSI-BLAST 4.0 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    3 View Details [182..369] FFAS03 2.02 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    4 View Details [370..529] MSA 9.156993 View MSA. No confident structure predictions are available.
    5 View Details [530..667] PSI-BLAST 4.221849 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle