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Protein Overview: gi|15218322, gi|...

General Information:
Name(s) found: gi|25354445 [NCBI NR]
gi|2160178 [NCBI NR]
gi|15218322 [NCBI NR]
Description(s) found:
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  • pir||B86233 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|2160178|gb|AAB60741.1| F21M12.27 gene product [Arabidopsis thaliana] [NCBI NR]
  • gi|15218322|ref|NP_172459.1| lyase [Arabidopsis thaliana] [NCBI NR]
  • (O04510) F21M12.27 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [imported] - Arabidopsis thalianagi|2160178|gb|AAB60741.1| F21M12.27 gene product [Arabidopsis thaliana]gi|15218322|ref|NP_172459.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | lyase | chr1:3208830-3211655 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F21M12.27 gene product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3208828-3211653 REVERSE LENGTH=631 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F21M12.27 protein OS=Arabidopsis thaliana GN=F21M12.27 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 631 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENRFLQLTL SNPEGFVTGI QYNGIDNVLA YYTNKEYDRG YWDVVWNFPG KKAKKTKGTL  60
   61 DRIEATKMEV ITQNDEKIEL SFTRTWNTSS TTAVPVNIDK RFVMLQNSSG FYSYAIFERL 120
  121 QGWPAVELDN MRLVFKLNKK KFHYMAISDD RQRYMPVPDD RVPPRGQPLA YPEAVQLLDP 180
  181 IEPEFKGEVD DKYEYSMESK DIKVHGWIST NDSVGFWQIT PSNEFRSAGP LKQFLGSHVG 240
  241 PTNLAVFHST HYVGADLIMS FKNGEAWKKV FGPVFIYLNS FPKGVDPLLL WHEAKNQTKI 300
  301 EEEKWPYNFT ASDDFPASDQ RGSVSGRLLV RDRFISSEDI PANGSYVGLA APGDVGSWQR 360
  361 ECKGYQFWSK ADENGSFSIN NVRSGRYNLY AFAPGFIGDY HNDTVFDISP GSKISLGDLV 420
  421 YEPPRDGSTL WEIGVPDRSA AEFYIPDPNP SFVNKLYLNH SDKYRQYGLW ERYSELYPDE 480
  481 DMVYNVDIDD YSKNWFFMQV TRKQANGGYK GTTWQIRFQF DDKMKNVTGN FKLRIALATS 540
  541 NVAELQVRVN DLSADPPLFR TEQIGRDNTI ARHGIHGLYW LYSVNVPAAS LHVGNNTIYL 600
  601 TQALATSPFQ GLMYDYIRLE YPDSINYITR S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..631] PSI-BLAST 126.0 Rhamnogalacturonan lyase from Aspergillus aculeatus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.24087518312023 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle