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Protein Overview: gi|15224243, gi|...

General Information:
Name(s) found: gi|61742677 [NCBI NR]
gi|3763931 [NCBI NR]
gi|25408847 [NCBI NR]
gi|15224243 [NCBI NR]
Description(s) found:
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  • gi|61742677|gb|AAX55159.1| hypothetical protein At2g43220 [Arabidopsis thaliana] [NCBI NR]
  • gi|3763931|gb|AAC64311.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E84863 hypothetical protein At2g43220 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15224243|ref|NP_181851.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZW73) At2g43220 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|25408847|pir||E84863 hypothetical protein At2g43220 [imported] - Arabidopsis thalianagi|15224243|ref|NP_181851.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr2:17971417-17973033 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein At2g43220 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:17964340-17965956 FORWARD LENGTH=538 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=At2g43220 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 538 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTLDLFWH EHPLYEKYRM FTCQECHRSA IPFFEVFYGC FRCNIKWHPY CVPRSTKNIN  60
   61 HPCHPNHPLE VLLQGPPSYS DEKCSLCQRK LSNFVYHCKL CNFSIDMECG NRPPPHKVDH 120
  121 PKCHEHALTL MGREVSFTCN ACGTHGERNP YVCLPCSVMF HYDCIDLPHV ININRHDHRI 180
  181 SHSYPLKRGN WVCEICRQDI NTTYGGYSCN KCPDFFVHSK CATRKDVWDG TELEGIPEEV 240
  241 VDVAPFEVIE EGVIYHFSHE KHNLFLIEDV FIDGAEDMHC EACARPVSSE KHYKCVECKF 300
  301 ILHEECANLP LTKRHGLSTG IFYLRFGKDF SEQNFSCDAC NRDGRGFSYK DEEGVVLDVL 360
  361 CASLSFFKHP KLHPHTLFLT TIDRGTCLAC GENKLNVLRC VDCDYSLDYK CATLPLVIKH 420
  421 RCDTHYLVLR SGEEAPEGKY WCEICEAETN PERWFYTCDD CGVVCHIECV TGDFLNIKPG 480
  481 IIMKNRENKF EVGFNDHDSR PKCTDCGSRC RFPRFFKVTR KNIEYYYCSK ACFQNAKF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] PSI-BLAST 7.09691 Crystal Structure of the Human Beta2-Chimaerin
    2 View Details [64..132] FFAS03 2.05 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [133..174] PSI-BLAST 4.0 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    4 View Details [175..538] FFAS03 1.64 Cytochrome c nitrite reductase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle