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Protein Overview: NEN1_ARATH

General Information:
Name(s) found: NEN1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • Protein NEN1 OS=Arabidopsis thaliana GN=NEN1 PE=2 SV=1 [Swiss-Prot]
  • (Q9FLR0) Exonuclease-like protein [athaliana3702.FASTAC.txt]
  • exonuclease-like protein [Arabidopsis thaliana]gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Exonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | exonuclease family protein | chr5:2453311-2455358 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • exonuclease-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • exonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:2453310-2455357 FORWARD LENGTH=468 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Exonuclease family protein OS=Arabidopsis thaliana GN=At5g07710 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 468 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEDRSEIA FFDVETTVPK RGQRFAILEF GSILVCPKKL TELRSYTTLV QPADLSLISS  60
   61 LSVRCNGIKR DDVVLAPLFA DIADTVYDIL HGRIWAGHNI LRFDCARIRE AFAEIGRQPP 120
  121 EPKGAIDSLG LLTQKFGRRA GDMKMATLAR YFGLGNQTHR SLDDVRMNLE VLKYCATVLF 180
  181 LESSLPYAHV DNSVSPETIS SRRRIDASRE GNTVTTSVRL PSISENSAAQ PDPFNMSVLR 240
  241 NEMASDNHIQ SDILMEEEQI EPSDVVASEN TSDHEGFLTP DAMSLSNIKA MLFPFYPGSQ 300
  301 MMKLKLLHGD SPLQLYCSYL KIRFGVNGKF LDNTGRRRLN FVVDLNPSLY SILEACDSNA 360
  361 QKLSVDSGST SEWNPVVNPM KGFVNYPNAR IHIATEINGD EARYATEIHQ RESSGATQKL 420
  421 IFSNPNNEEL ESLLTTGSVV DAFLSLEPYD YQQKAGIRLV AKKLVIQS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..334] PSI-BLAST 26.0 Exonuclease I
    2 View Details [335..468] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle