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Protein Overview: CDF1_ARATH

General Information:
Name(s) found: CDF1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|71833953|dbj|BAE16983.1| cyclic dof factor 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|55583963|sp|Q8W1E3.2|DOF55_ARATH RecName: Full=Dof zinc finger protein DOF5.5; Short=AtDOF5.5 [NCBI NR]
  • gi|145359559|ref|NP_201049.3| CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|10178074|dbj|BAB11493.1| H-protein promoter binding factor-like protein [Arabidopsis thaliana] [NCBI NR]
  • Dof zinc finger protein DOF5.5 OS=Arabidopsis thaliana GN=DOF5.5 PE=1 SV=2 [Swiss-Prot]
  • Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2 [Swiss-Prot]
  • (Q9FJJ9) H-protein promoter binding factor-like protein [athaliana3702.FASTAC.txt]
  • H-protein promoter binding factor-like protein [Arabidopsis thaliana]gi|55583963|sp|Q8W1E3|DF55_ARATH Dof zinc finger protein DOF5.5 (AtDOF5.5) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of Dof zinc finger protein DOF5.5 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CDF1 | CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor | chr5:25086524-25088013 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cyclic dof factor 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Dof zinc finger protein DOF5.5 (AtDOF5.5) [nr-271106-contam.fasta]
  • H-protein promoter binding factor-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CDF1 | cycling DOF factor 1 | chr5:25069298-25070787 REVERSE LENGTH=298 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: regulation of timing of transition from vegetative to reproductive phase [IMP]
    negative regulation of transcription [IDA]
    regulation of transcription [TAS]
    Molecular Function: DNA binding [IDA][ISS]
    transcription factor activity [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN  60
   61 SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG AGRRKNKNNS PTSHYHHVTI 120
  121 SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN 180
  181 PAFYPVYPYW SMPVLSSPVS SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE 240
  241 AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] Pfam 36.008774 No description for PF02701.7 was found. No confident structure predictions are available.
    2 View Details [124..298] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle