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Protein Overview: gi|51971657, gi|...

General Information:
Name(s) found: gi|51971657 [NCBI NR]
gi|42565086 [NCBI NR]
gi|11994389 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|51971657|dbj|BAD44493.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42565086|ref|NP_188790.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11994389|dbj|BAB02348.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: hydrolase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCVFRRKLG CLFSRLRWVI KKRVRARVIV RRFRKARWRA RRKESPESEV SSIHLSSNSG  60
   61 RHIRVATFNV AMFSLAPVVQ TMEETAFLGH LDSSNITCPS PKGILKQSPL HSSAVRKPKV 120
  121 CINLPDNEIS LAQSYSFLSM VENDNDGKEN RGSLSMRSPV CLPSCWWDQE SFNGYSSRRS 180
  181 IAELLRELDA DILALQDVKA EEETLMKPLS DLASALGMKY VFAESWAPEY GNAILSKWPI 240
  241 KKWRVQRIAD VDDFRNVLKV TVEIPWAGDV NVYCTQLDHL DENWRMKQID AITRGDESPH 300
  301 ILLGGLNSLD GSDYSIARWN HIVKYYEDSG KPTPRVEVMR FLKGKGYLDS KEFAGECEPV 360
  361 VIIAKGQNVQ GTCKYGTRVD YILASPESPY EFVPGSYSVV SSKGTSDHHI VKVDLVITKE 420
  421 RSRGNFKHSR KKAKQKIFQI KANLMSKDTW KLGNLMSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] MSA 1.213994 View MSA. No confident structure predictions are available.
    2 View Details [124..458] PSI-BLAST 56.39794 THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.23505510330573 bayes_pls_golite062009
  • hydrolase activity
    		•  0.79070010643157 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.71596812518333 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle